MXO02936.5prime Sequence
867 bp (801 high quality bases) assembled on 2007-05-15
> MXO02936.5prime
CAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCAAGCACAAT
GACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCGATGCAGGG
ATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGGGCTGGGGG
ATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGCATGCCGGA
TGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGCATTATTAG
CACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCGCACCGGCT
TCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCACCCGGGAG
TCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTCGGCCTCAC
GCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTTGTGCCGCC
AGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTCTGCCGGAG
GAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATAAAGCGCGT
AAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGACTTTAAGA
ACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGGAACCGGAG
ATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTGCTCGCTTG
CGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAGCTTCATCC
ACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCAACCAGGTC
GTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGCATCATCAT
CATTGCCTTCCCCGGAG
MXO02936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1906-PA | 1107 | CG1906-RA | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG1906-PB | 1116 | CG1906-RB | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG1906-PE | 1125 | CG1906-RE | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG1906-PD | 1107 | CG1906-RD | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG1906-PC | 1107 | CG1906-RC | 1..859 | 9..867 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alph-RC | 2341 | CG1906-RC | 180..1040 | 7..867 | 4305 | 100 | Plus |
| alph-RD | 2417 | CG1906-RD | 256..1116 | 7..867 | 4305 | 100 | Plus |
| alph-RE | 1683 | CG1906-RE | 415..1275 | 7..867 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29593349..29594164 | 7..822 | 4080 | 100 | Plus |
| 3R | 32079331 | 3R | 29594225..29594272 | 820..867 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:05 has no hits.
MXO02936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:48 Download gff for
MXO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1906-PC | 1..859 | 9..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:26 Download gff for
MXO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alph-RE | 409..1275 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:27 Download gff for
MXO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alph-RE | 409..1275 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:27 Download gff for
MXO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29593343..29594163 | 1..821 | 99 | -> | Plus |
| 3R | 29594227..29594272 | 822..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:26 Download gff for
MXO02936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25419065..25419885 | 1..821 | 99 | -> | Plus |
| arm_3R | 25419949..25419994 | 822..867 | 100 | | Plus |
