MXO02939.5prime Sequence
827 bp (737 high quality bases) assembled on 2007-05-15
> MXO02939.5prime
CAGTCGACATGGGAAGAACACTGGACATAACCGGAAGACAGAATGATAAG
AGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACGGAGAAAGG
CGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCATGAGACCA
GCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCGGTGCCGGA
CTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCAGGAGCAAC
CATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGAGCGCATGC
TGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCGTGGACTTT
CTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGGCCACGCCC
ACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAATGTTCCTCT
GCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCATCACGGAA
AATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGCATGAGCAT
GGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCTGATGACCA
ACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGGCGCTGCTC
TTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGACCCATGCC
GTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTTGGCCCTGT
TCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCATCCTGCCG
CTGCGGAACTCGATGCGCCGACCGGAG
MXO02939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4991-PB | 1380 | CG4991-RB | 1..819 | 9..827 | 4070 | 99.8 | Plus |
| CG4991-PA | 1380 | CG4991-RA | 1..819 | 9..827 | 4070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4991-RE | 2084 | CG4991-RE | 224..1046 | 5..827 | 4085 | 99.8 | Plus |
| CG4991-RD | 2012 | CG4991-RD | 152..974 | 5..827 | 4085 | 99.8 | Plus |
| CG4991-RF | 2177 | CG4991-RF | 317..1139 | 5..827 | 4085 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17102435..17103257 | 5..827 | 4085 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:12 has no hits.
MXO02939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:02 Download gff for
MXO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:51 Download gff for
MXO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-RF | 313..1139 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:26 Download gff for
MXO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-RF | 313..1139 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:26 Download gff for
MXO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17102431..17103257 | 1..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:51 Download gff for
MXO02939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16996464..16997290 | 1..827 | 99 | | Plus |
