MXO02940.5prime Sequence
858 bp (707 high quality bases) assembled on 2007-05-15
> MXO02940.5prime
CAGTCGACATGCGCCTGTTTCCACCCCGATTCTCAGCCGCCTCCTCGTCG
ATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTCAACCCCTC
GCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGCCTGCGAGA
AGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGACTGGCGAAT
ATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCACACCAGATC
CGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGATGTGCTGG
TGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGTTTGTGGCC
GATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAAACGATGGC
CCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGTGGATGCGC
CTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACATGTCTCGC
ATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTTGGCGGAAA
TCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGCCTGTGATC
TGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCCTATGCGAT
CAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCACAGCAGCGA
GCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTCGCACCTGT
ACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTGTTGTAGAG
CACCATGGCCATGACAAACATGACACATTGCCCCCCTTTGAAGTAGCCAT
TTTGAAGG
MXO02940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8808-PA | 1242 | Pdk-RA | 1..844 | 9..852 | 4070 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk-RC | 2732 | CG8808-RC | 810..1655 | 7..852 | 4140 | 99.3 | Plus |
| Pdk-RD | 2440 | CG8808-RD | 810..1655 | 7..852 | 4140 | 99.3 | Plus |
| Pdk-RB | 2293 | CG8808-RB | 810..1655 | 7..852 | 4140 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9432490..9432810 | 532..852 | 1545 | 98.8 | Plus |
| 2R | 25286936 | 2R | 9431970..9432180 | 132..342 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 9432235..9432425 | 341..531 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 9427248..9427375 | 7..134 | 610 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:10 has no hits.
MXO02940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:52 Download gff for
MXO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8808-PA | 1..850 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:04 Download gff for
MXO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RB | 804..1661 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:21 Download gff for
MXO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RB | 804..1661 | 1..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:21 Download gff for
MXO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9427242..9427373 | 1..132 | 96 | -> | Plus |
| 2R | 9431971..9432178 | 133..340 | 100 | -> | Plus |
| 2R | 9432235..9432425 | 341..531 | 100 | -> | Plus |
| 2R | 9432490..9432816 | 532..858 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:04 Download gff for
MXO02940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5314747..5314878 | 1..132 | 96 | -> | Plus |
| arm_2R | 5319476..5319683 | 133..340 | 100 | -> | Plus |
| arm_2R | 5319740..5319930 | 341..531 | 100 | -> | Plus |
| arm_2R | 5319995..5320321 | 532..858 | 98 | | Plus |
