MXO02947.5prime Sequence
872 bp (739 high quality bases) assembled on 2007-05-15
> MXO02947.5prime
CAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAAACTGCACA
ATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGATCGGCCAG
ATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACACAAAACTC
GACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAGCCGCCCTG
GCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAATGCAGTTAG
CCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGTAAAACTGA
CGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGTACGATGAC
CAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTTGAGCAGGA
GCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGAGGTGGATA
AATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTCGTCTGTTT
CGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATATTTGTTTTT
GCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGCATTCAACA
TGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAATTTCTAGTG
ATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAATGTCGATCC
ACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTGGAAGGAGA
AGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCACTCCCCTG
GAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCACATGGTGGC
CACCACACTGCAGCTGCACTTC
MXO02947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4662-PB | 1440 | CG4662-RB | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG4662-PA | 1494 | CG4662-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4662-RA | 1830 | CG4662-RA | 62..931 | 3..872 | 4335 | 99.9 | Plus |
| CG4662-RB | 2279 | CG4662-RB | 62..931 | 3..872 | 4335 | 99.9 | Plus |
| CG4662-RC | 1754 | CG4662-RC | 62..775 | 3..716 | 3555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19847372..19847635 | 3..266 | 1305 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19850011..19850153 | 266..408 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 19850209..19850320 | 409..520 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 19851832..19851918 | 717..803 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 19850870..19850956 | 568..654 | 420 | 98.9 | Plus |
| 3R | 32079331 | 3R | 19852021..19852091 | 802..872 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 19851064..19851130 | 650..716 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 19850763..19850811 | 519..567 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:45 has no hits.
MXO02947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:57 Download gff for
MXO02947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-PA | 1..864 | 9..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:46 Download gff for
MXO02947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-RB | 60..931 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:18 Download gff for
MXO02947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4662-RB | 60..931 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:18 Download gff for
MXO02947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19850012..19850153 | 267..408 | 100 | -> | Plus |
| 3R | 19850209..19850319 | 409..519 | 100 | -> | Plus |
| 3R | 19850764..19850811 | 520..567 | 100 | -> | Plus |
| 3R | 19850870..19850952 | 568..650 | 100 | -> | Plus |
| 3R | 19851065..19851130 | 651..716 | 100 | -> | Plus |
| 3R | 19851832..19851918 | 717..803 | 100 | -> | Plus |
| 3R | 19852023..19852091 | 804..872 | 100 | | Plus |
| 3R | 19847370..19847635 | 1..266 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:46 Download gff for
MXO02947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15676592..15676674 | 568..650 | 100 | -> | Plus |
| arm_3R | 15675734..15675875 | 267..408 | 100 | -> | Plus |
| arm_3R | 15675931..15676041 | 409..519 | 100 | -> | Plus |
| arm_3R | 15676486..15676533 | 520..567 | 100 | -> | Plus |
| arm_3R | 15676787..15676852 | 651..716 | 100 | -> | Plus |
| arm_3R | 15677554..15677640 | 717..803 | 100 | -> | Plus |
| arm_3R | 15677745..15677813 | 804..872 | 100 | | Plus |
| arm_3R | 15673092..15673357 | 1..266 | 99 | -> | Plus |
