MXO02948.5prime Sequence
477 bp (477 high quality bases) assembled on 2007-05-15
> MXO02948.5prime
CAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTTCCCAATCA
GCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTGAACGCAGA
TGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCTGACTCCCT
CCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCCAGGTGCGT
TTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTGGGTCTGAA
GCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGCCGTCGCCA
TCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCAAGTTCCGT
CTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTACTACAAGAC
CAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCACTGCCTCCG
CCCTGGTTGCCGCAAGCTTTCTAGACC
MXO02948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13389-PA | 456 | RpS13-RA | 1..453 | 9..461 | 2265 | 100 | Plus |
| CG13389-PB | 456 | RpS13-RB | 1..453 | 9..461 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS13-RC | 899 | CG13389-RC | 100..552 | 9..461 | 2265 | 100 | Plus |
| RpS13-RB | 611 | CG13389-RB | 34..486 | 9..461 | 2265 | 100 | Plus |
| RpS13-RA | 633 | CG13389-RA | 47..499 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8363824..8364126 | 461..159 | 1515 | 100 | Minus |
| 2L | 23513712 | 2L | 8364187..8364316 | 160..31 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:13 has no hits.
MXO02948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:01 Download gff for
MXO02948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13389-PB | 1..456 | 9..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:03 Download gff for
MXO02948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS13-RA | 39..510 | 1..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:18 Download gff for
MXO02948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS13-RA | 39..510 | 1..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:18 Download gff for
MXO02948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8363813..8364125 | 160..475 | 98 | <- | Minus |
| 2L | 8364188..8364315 | 32..159 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:03 Download gff for
MXO02948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8363813..8364125 | 160..475 | 98 | <- | Minus |
| arm_2L | 8364188..8364315 | 32..159 | 100 | <- | Minus |
