MXO02950.5prime Sequence
849 bp (730 high quality bases) assembled on 2007-05-15
> MXO02950.5prime
CAGTCGACATGTCGCCAAATTCTATCTTGATTTTCGGCCTCATAAGTGCT
CTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTTTTGGAGCT
CAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTTGGTCATGT
TCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCATTTTTGCT
CTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGTCGCCTAGA
TTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCGTGGCTATC
CCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACAACGGAGAC
CGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCTGGGCCTCC
AGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAAGGGATCCC
ATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGGTGTGGGAT
ACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTTTTCTATGC
CACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAAACTGCCAG
CGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGCATGGGCAT
TTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTTTTCCAATG
GGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCGGTTCAACA
TCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTGTGGTACAG
GAGGATAAGCTCAATCAAATAGCCACGCATGAGCTGGAGTTTCGGGACA
MXO02950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5027-PA | 1293 | CG5027-RA | 1..841 | 9..849 | 4130 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5027-RA | 1862 | CG5027-RA | 202..1042 | 9..849 | 4160 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16229699..16230262 | 286..849 | 2805 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16229404..16229645 | 48..289 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:47 has no hits.
MXO02950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:18 Download gff for
MXO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-PA | 1..840 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:55 Download gff for
MXO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1041 | 2..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:06 Download gff for
MXO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1041 | 2..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:06 Download gff for
MXO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16229405..16229643 | 49..287 | 100 | -> | Plus |
| 3L | 16229701..16230261 | 288..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:55 Download gff for
MXO02950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16222505..16222743 | 49..287 | 100 | -> | Plus |
| arm_3L | 16222801..16223361 | 288..848 | 99 | | Plus |
