MXO02956.5prime Sequence
893 bp (855 high quality bases) assembled on 2007-05-15
> MXO02956.5prime
CAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGCACACGCTG
ATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCCAACCAGGG
AAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACGTTCCATCA
AGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGAAGATCGGC
GAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAGACGCTGGC
CATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGGCAGTCTGG
TTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGCCACTGGTT
ACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAACAGCAATGC
AGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATTGATACCGA
AGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCTGGAAACTG
TCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATCGCCGTGGA
GCCGGGCAACGAGTGGGTTCGCCACCGGCGCTGGCGATCGTGTGATCAAG
ATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCGGTCATGT
GAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTATCTGTTTA
GCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTACAACAAA
GTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGCTGGCCCT
GCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCCACTGCCC
GCATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGAC
MXO02956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1796-PA | 1449 | CG1796-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG1796-PA | 1449 | CG1796-RA | 557..884 | 566..893 | 1640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1620 | CG1796-RA | 93..976 | 9..893 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12021338..12022102 | 128..893 | 3780 | 99.9 | Plus |
| X | 23542271 | X | 12021160..12021278 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:25:49 has no hits.
MXO02956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:22 Download gff for
MXO02956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1796-PA | 1..884 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:18 Download gff for
MXO02956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 87..976 | 1..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:24 Download gff for
MXO02956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 87..976 | 1..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:24 Download gff for
MXO02956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12021154..12021278 | 1..127 | 97 | -> | Plus |
| X | 12021338..12022102 | 128..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:18 Download gff for
MXO02956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11915187..11915311 | 1..127 | 97 | -> | Plus |
| arm_X | 11915371..11916135 | 128..893 | 99 | | Plus |
