MXO02958.5prime Sequence
855 bp (779 high quality bases) assembled on 2007-05-15
> MXO02958.5prime
CAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGTTGCTCAAG
AATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAGTTCGAGGT
CGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGACAGCGACA
GCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGGAGCTACGT
TCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATGAGCGAGAT
CGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGTGGATCGGG
AGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTGGCTACTGG
GAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGCAGCAAATT
CGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGAGGTCGCCG
TCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCTCCTACAAG
CTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCCAAGGCGGA
TGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGGAGATGCGA
AGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTTGTGTGGTC
TATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCGGTGAAGCT
CGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGTGAGCTCAC
TGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGCAAACTGAA
CTGCTTACTACCCTGAACCCAAACCTGATGATCGTTTACAACAAGATGAA
CAAGC
MXO02958.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4735-PA | 1368 | shu-RA | 1..847 | 9..855 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 93..939 | 9..855 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23842328..23843078 | 818..68 | 3755 | 100 | Minus |
| 2R | 25286936 | 2R | 23843135..23843194 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:43 has no hits.
MXO02958.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:10 Download gff for
MXO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4735-PA | 1..847 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:21 Download gff for
MXO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..939 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:28 Download gff for
MXO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..939 | 9..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:28 Download gff for
MXO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23842216..23842252 | 819..855 | 97 | <- | Minus |
| 2R | 23842328..23843078 | 68..818 | 100 | <- | Minus |
| 2R | 23843136..23843194 | 9..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:21 Download gff for
MXO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729739..19729775 | 819..855 | 97 | <- | Minus |
| arm_2R | 19729851..19730601 | 68..818 | 100 | <- | Minus |
| arm_2R | 19730659..19730717 | 9..67 | 100 | | Minus |
