MXO02959.5prime Sequence
752 bp (751 high quality bases) assembled on 2007-05-15
> MXO02959.5prime
CAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGTGTGGCCTC
CTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAGGAGGACAC
CGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGAAACCTTCG
ACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTGCTCCATGG
TGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTGGCCGAGAT
CATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGACTGCACCA
AGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATCCCACACTG
CGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAGGGCACTCG
CGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAGCGCACCCG
CTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGAACCTTAAT
ATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAGCACGTGTC
CACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAGTCATTGTC
AGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGATTAAAGAG
CCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGTTCCATCTG
CCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGATCGAGGATG
GC
MXO02959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1837-PA | 1251 | CG1837-RA | 1..744 | 9..752 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prtp-RC | 1740 | CG1837-RC | 83..827 | 8..752 | 3725 | 100 | Plus |
| prtp-RB | 1746 | CG1837-RB | 89..833 | 8..752 | 3725 | 100 | Plus |
| prtp-RA | 1763 | CG1837-RA | 106..850 | 8..752 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11718367..11718770 | 199..602 | 2020 | 100 | Plus |
| X | 23542271 | X | 11717073..11717267 | 8..202 | 975 | 100 | Plus |
| X | 23542271 | X | 11718829..11718981 | 600..752 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:10:26 has no hits.
MXO02959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:20 Download gff for
MXO02959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1837-PA | 1..744 | 9..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:46 Download gff for
MXO02959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..850 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:08 Download gff for
MXO02959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..850 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:08 Download gff for
MXO02959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11717065..11717264 | 1..199 | 98 | -> | Plus |
| X | 11718368..11718770 | 200..602 | 100 | -> | Plus |
| X | 11718832..11718981 | 603..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:46 Download gff for
MXO02959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11611098..11611297 | 1..199 | 98 | -> | Plus |
| arm_X | 11612401..11612803 | 200..602 | 100 | -> | Plus |
| arm_X | 11612865..11613014 | 603..752 | 100 | | Plus |
