MXO02961.5prime Sequence
862 bp (778 high quality bases) assembled on 2007-05-15
> MXO02961.5prime
CAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGAATATATGG
GGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGATGCCATCTG
CAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCAGGAGGTGT
GGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGGCGGTCCTG
CCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGTCTGCTGGT
ACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTGGTCCGTAA
ATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCGGCAAAGGT
GTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCACCTATATAA
TGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTACAAGACAC
ATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAGCCACCAGG
GGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCCCAGCCACA
GGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCTCGACAGCT
GCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACTCATACACA
TCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATCGATCACAT
CTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGAATACAAAC
TGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCTCCGACCAC
GAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAACCTAAAAGTGA
GGAGCCAGTGGC
MXO02961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 1329 | CG12034-RA | 1..854 | 9..862 | 4245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1002 | 2..862 | 4260 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220243 | 49..862 | 4055 | 99.9 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 2..50 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:00 has no hits.
MXO02961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:31 Download gff for
MXO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 1..854 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:59 Download gff for
MXO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 141..1002 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:12 Download gff for
MXO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 141..1002 | 1..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:12 Download gff for
MXO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219296..3219344 | 1..49 | 93 | -> | Plus |
| 3L | 3219431..3220243 | 50..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:59 Download gff for
MXO02961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219296..3219344 | 1..49 | 93 | -> | Plus |
| arm_3L | 3219431..3220243 | 50..862 | 99 | | Plus |
