MXO02964.5prime Sequence
852 bp (757 high quality bases) assembled on 2007-05-15
> MXO02964.5prime
CAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCGATGGCAAG
GCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTCAAGGGAAT
GGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCATTGTGGGCG
AGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCGCCTGCCGG
GAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCTACCACGCA
GGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCCCCAGGTCA
CGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATGAGCGCACC
ATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTCAATGAGGT
CAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCCGGCCACGC
CGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAACTCTCGGT
CGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTACCGATGGC
AATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAATGGATGCCA
CGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGGCTCGCCAT
TGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCGGGTTTGAT
CACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGTGGGCATCA
ACCGCATCAGGGATGAGAGCACTGGCCAGTTTAAGCTGGTCGGAGACGTG
GACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCTGTGCCCGG
CG
MXO02964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18466-PB | 930 | Nmdmc-RB | 1..844 | 9..852 | 4195 | 99.8 | Plus |
| CG18466-PA | 912 | Nmdmc-RA | 1..826 | 27..852 | 4105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdmc-RB | 1257 | CG18466-RB | 179..1022 | 9..852 | 4205 | 99.9 | Plus |
| Nmdmc-RA | 1156 | CG18466-RA | 89..921 | 20..852 | 4150 | 99.9 | Plus |
| Nmdmc-RC | 1233 | CG18466-RC | 167..998 | 21..852 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9042852..9043641 | 810..21 | 3935 | 99.9 | Minus |
| 3R | 32079331 | 3R | 9042743..9042793 | 852..802 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:20 has no hits.
MXO02964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:33 Download gff for
MXO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18466-PB | 1..844 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:06 Download gff for
MXO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1022 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:27 Download gff for
MXO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1022 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:27 Download gff for
MXO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9042852..9043639 | 23..810 | 99 | <- | Minus |
| 3R | 9042743..9042784 | 811..852 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:06 Download gff for
MXO02964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4868465..4868506 | 811..852 | 100 | <- | Minus |
| arm_3R | 4868574..4869361 | 23..810 | 99 | <- | Minus |
