MXO02966.5prime Sequence
896 bp (731 high quality bases) assembled on 2007-05-15
> MXO02966.5prime
CAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGCGCGAGGAG
AAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCCCTTGACGA
ATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACGCCATGTGG
ACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTGTCCTGCAG
CGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAGCGGGATCT
TAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTGCCGCGAAC
AGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGCAAATCAAA
GTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAAAGCTCCCT
GAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAACATCAAGC
TGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGCTGGCCGAG
CAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAACAGGTTCA
GTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCAGGTGGAGG
CTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTGGCCTGGAG
AAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGATCGGGAGCA
CCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGATGACTTCC
AGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACAAGGTGGAG
CTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAGGCGCTGGG
CTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGATTTA
MXO02966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5886-PA | 1548 | CG5886-RA | 1..888 | 9..896 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5886-RA | 1894 | CG5886-RA | 101..989 | 8..896 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25851919..25852322 | 80..483 | 2020 | 100 | Plus |
| 3R | 32079331 | 3R | 25852817..25853084 | 629..896 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 25852428..25852575 | 482..629 | 740 | 100 | Plus |
| Y | 3667352 | Y | 1457593..1457737 | 186..333 | 435 | 87.8 | Plus |
| Y | 3667352 | Y | 1883828..1883972 | 333..186 | 435 | 87.8 | Minus |
| Y | 3667352 | Y | 1888797..1888941 | 333..186 | 435 | 87.8 | Minus |
| 3R | 32079331 | 3R | 25851732..25851806 | 8..82 | 375 | 100 | Plus |
| 3L | 28110227 | 3L | 23315659..23315764 | 321..216 | 290 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:52 has no hits.
MXO02966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:52 Download gff for
MXO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-PA | 1..887 | 9..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:17 Download gff for
MXO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-RA | 93..988 | 1..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:46 Download gff for
MXO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5886-RA | 93..988 | 1..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:46 Download gff for
MXO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25851724..25851804 | 1..80 | 95 | -> | Plus |
| 3R | 25851920..25852320 | 81..481 | 100 | -> | Plus |
| 3R | 25852428..25852574 | 482..628 | 100 | -> | Plus |
| 3R | 25852817..25853083 | 629..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:17 Download gff for
MXO02966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21677446..21677526 | 1..80 | 95 | -> | Plus |
| arm_3R | 21677642..21678042 | 81..481 | 100 | -> | Plus |
| arm_3R | 21678150..21678296 | 482..628 | 100 | -> | Plus |
| arm_3R | 21678539..21678805 | 629..895 | 100 | | Plus |
