MXO02967.5prime Sequence
834 bp (729 high quality bases) assembled on 2007-05-15
> MXO02967.5prime
CAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATTTCTTTTAC
GGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCCAAGAAGTC
AGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCATTACAACT
TCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGGAGGAGGGC
AGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAGTACTCGCT
GCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCACATCACCG
AGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGAAGGTATCC
AACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAGGGAGGCAT
CACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTACCGTAGGG
AGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTACCACGCAG
ACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCCTTGCGCAT
CGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATTCGAGCCTC
GCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATCCACTGGGT
CGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCAAATATGGG
CCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAACCCGAATA
GGCCGGGACAGGGTGGAAATCATCCAGATCATATGCGCCCACCAGATTGG
AATCCCGATTACTACATGGCAAGCTTTCTAGACC
MXO02967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8979-PA | 813 | CG8979-RA | 1..760 | 9..768 | 3800 | 100 | Plus |
| CG8979-PC | 813 | CG8979-RC | 1..760 | 9..768 | 3800 | 100 | Plus |
| CG8979-PB | 813 | CG8979-RB | 1..760 | 9..768 | 3800 | 100 | Plus |
| CG8979-PA | 813 | CG8979-RA | 764..810 | 772..818 | 235 | 100 | Plus |
| CG8979-PC | 813 | CG8979-RC | 764..810 | 772..818 | 235 | 100 | Plus |
| CG8979-PB | 813 | CG8979-RB | 764..810 | 772..818 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PI31-RF | 1172 | CG8979-RF | 173..982 | 9..818 | 4005 | 99.8 | Plus |
| PI31-RD | 1118 | CG8979-RD | 119..928 | 9..818 | 4005 | 99.8 | Plus |
| PI31-RB | 1203 | CG8979-RB | 204..1013 | 9..818 | 4005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11967837..11968231 | 571..177 | 1975 | 100 | Minus |
| 2R | 25286936 | 2R | 11967533..11967780 | 818..571 | 1195 | 98.8 | Minus |
| 2R | 25286936 | 2R | 11968284..11968451 | 176..9 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:53 has no hits.
MXO02967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:36 Download gff for
MXO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8979-PB | 1..813 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:57 Download gff for
MXO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 199..1018 | 1..826 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:10 Download gff for
MXO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 199..1018 | 1..826 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:10 Download gff for
MXO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11967528..11967779 | 572..826 | 97 | <- | Minus |
| 2R | 11967837..11968231 | 177..571 | 100 | <- | Minus |
| 2R | 11968284..11968455 | 1..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:57 Download gff for
MXO02967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7855789..7855960 | 1..176 | 97 | | Minus |
| arm_2R | 7855033..7855284 | 572..826 | 97 | <- | Minus |
| arm_2R | 7855342..7855736 | 177..571 | 100 | <- | Minus |
