MXO02969.5prime Sequence
860 bp (817 high quality bases) assembled on 2007-05-15
> MXO02969.5prime
CAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCATCAATTCG
GCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTGCCGGACGA
CGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCAGTACAGAG
GCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGTCCCTGCAG
AACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGGATGCACCA
GAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCAGATCGTCA
ATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGGACACCGAC
CAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCGCTCCTGGA
CGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGATGAGGGAGC
AGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAAACGGCCTG
CTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGTGGTGTTGT
GCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTCAACGCCCA
ACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCGGCTCCAAT
GGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACAGGTAGCAA
GCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAGCTCTCTGG
AGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTGGCAGTGGT
GGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGTGGAGCGGG
ACAGGGACGA
MXO02969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7379-PA | 1302 | CG7379-RA | 1..852 | 9..860 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7379-RA | 1787 | CG7379-RA | 196..1047 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17797177..17797888 | 860..149 | 3560 | 100 | Minus |
| 3R | 32079331 | 3R | 17797967..17798109 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:37 has no hits.
MXO02969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:50 Download gff for
MXO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-PA | 1..851 | 9..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:37 Download gff for
MXO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1046 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:41 Download gff for
MXO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1046 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:41 Download gff for
MXO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17797178..17797886 | 151..859 | 100 | <- | Minus |
| 3R | 17797968..17798113 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:37 Download gff for
MXO02969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13622900..13623608 | 151..859 | 100 | <- | Minus |
| arm_3R | 13623690..13623835 | 1..150 | 97 | | Minus |
