Clone MXO02971 Report

Search the DGRC for MXO02971

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:29
Well:71
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9836-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02971.5prime Sequence

486 bp (486 high quality bases) assembled on 2007-05-15

> MXO02971.5prime
CAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGCGATCGCAG
CTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAAAATGTCGT
TGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAAGAAGGATG
TCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCGATGTGATG
AAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGACGCCAAGTT
CAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCTGGCCACCG
AGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGAAGAATACG
GACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCATTGCTCCAT
GCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAAGGTCAAGC
AGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACC

MXO02971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 465 CG9836-RA 1..462 9..470 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..568 9..470 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823427..8823801 470..96 1875 100 Minus
3R 32079331 3R 8823983..8824071 97..9 445 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:09:38 has no hits.

MXO02971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:47 Download gff for MXO02971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 9..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:25 Download gff for MXO02971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 9..470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:55 Download gff for MXO02971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 9..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:55 Download gff for MXO02971.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8823427..8823801 96..470 100 <- Minus
3R 8823985..8824071 9..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:25 Download gff for MXO02971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649149..4649523 96..470 100 <- Minus
arm_3R 4649707..4649793 9..95 100   Minus