MXO02973.5prime Sequence
884 bp (751 high quality bases) assembled on 2007-05-15
> MXO02973.5prime
CAGTCGACATGCTGAAGCACGTGCCTTTTTAACCGCTGCGAAATCGATCC
GATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGCGCCAGCTC
CATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAACACCCTCGA
GGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGACCACAATC
AAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAGACCCTTGG
AATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCTGCTAAGAC
GCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTATCCATGGAG
GTAGCTGTGCGTCGGGCTGGAGTGAATATTATCTTGGTGCTGGACGACGA
CACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGAGTCCCGAT
TCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACACCTCCGCG
CTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAGGAGACCAC
CTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTCACCCGAGC
CGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGGAGTGTCAG
CGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATGGAGCGGAT
GAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCCCAATTACG
CACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTGGACAGGCC
GCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCCTTGGAGTC
GGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGC
MXO02973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8965-PA | 1293 | CG8965-RA | 373..876 | 381..884 | 2520 | 100 | Plus |
| CG8965-PA | 1293 | CG8965-RA | 25..368 | 33..376 | 1720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 565..1440 | 9..884 | 4245 | 99 | Plus |
| rau-RA | 2215 | CG8965-RA | 512..1387 | 9..884 | 4245 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860597..5861180 | 884..301 | 2875 | 99.5 | Minus |
| 2L | 23513712 | 2L | 5861425..5861607 | 191..9 | 825 | 96.7 | Minus |
| 2L | 23513712 | 2L | 5861252..5861367 | 301..186 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:38 has no hits.
MXO02973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:06:55 Download gff for
MXO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-PA | 1..876 | 9..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:12 Download gff for
MXO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 512..1387 | 9..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:49 Download gff for
MXO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 512..1387 | 9..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:49 Download gff for
MXO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5860597..5861179 | 302..884 | 99 | <- | Minus |
| 2L | 5861252..5861361 | 192..301 | 100 | <- | Minus |
| 2L | 5861425..5861607 | 9..191 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:12 Download gff for
MXO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860597..5861179 | 302..884 | 99 | <- | Minus |
| arm_2L | 5861252..5861361 | 192..301 | 100 | <- | Minus |
| arm_2L | 5861425..5861607 | 9..191 | 96 | | Minus |
