MXO02974.5prime Sequence
849 bp (719 high quality bases) assembled on 2007-05-15
> MXO02974.5prime
CAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCATTGAGATC
ACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGCTGCGACTG
GGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGCGGACCTGC
CGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAACCAAAGCCG
ACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGGGCCACCAA
GAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGACATCGCCC
CGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCGACATGTCG
AAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCCGGCGGCTC
AGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAAGAACTTCC
GGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAAACATCGCA
GAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGATCTGGCGG
TGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAATGACCACA
CGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACAAGCCGGTG
GTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGCGGTGAGCT
TCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGACTGTCATGC
GCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGGTCAATGTG
GATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCGGCCAGTTCCGC
MXO02974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11139-PA | 1224 | p47-RA | 1..841 | 9..849 | 4180 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p47-RA | 1432 | CG11139-RA | 90..930 | 9..849 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7465778..7466207 | 755..326 | 2150 | 100 | Minus |
| 2R | 25286936 | 2R | 7466263..7466479 | 325..109 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 7466569..7466670 | 110..9 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 7465581..7465676 | 849..754 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:28 has no hits.
MXO02974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:04 Download gff for
MXO02974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11139-PA | 1..841 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:02 Download gff for
MXO02974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p47-RA | 82..930 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:32 Download gff for
MXO02974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p47-RA | 82..930 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:32 Download gff for
MXO02974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7465581..7465675 | 755..849 | 98 | <- | Minus |
| 2R | 7465779..7466207 | 326..754 | 100 | <- | Minus |
| 2R | 7466263..7466477 | 111..325 | 100 | <- | Minus |
| 2R | 7466569..7466678 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:02 Download gff for
MXO02974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3353086..3353180 | 755..849 | 98 | <- | Minus |
| arm_2R | 3353284..3353712 | 326..754 | 100 | <- | Minus |
| arm_2R | 3353768..3353982 | 111..325 | 100 | <- | Minus |
| arm_2R | 3354074..3354183 | 1..110 | 96 | | Minus |
