MXO02975.5prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> MXO02975.5prime
CAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCCGCACCCTC
AGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAGGTGTTCGG
TCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTCCAAGTTGA
GCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGGCCACCATC
CGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATCATCAACAA
GAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCTCCGCTTCG
CCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACGGACGTCTA
AAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATGGCCGCACA
TCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTTGGATGCGT
CCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGAAGGGCAAC
GAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATTGGTGGCCT
GATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGCCACTAAGG
TCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCTTTCTAGAC
C
MXO02975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4307-PA | 630 | Oscp-RA | 1..627 | 9..635 | 3135 | 100 | Plus |
| CG4307-PB | 381 | Oscp-RB | 1..378 | 258..635 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oscp-RA | 802 | CG4307-RA | 71..697 | 9..635 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15265926..15266370 | 38..482 | 2225 | 100 | Plus |
| 3R | 32079331 | 3R | 15266431..15266585 | 481..635 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:26:06 has no hits.
MXO02975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:12 Download gff for
MXO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4307-PA | 1..630 | 9..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:28 Download gff for
MXO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 71..697 | 9..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:35 Download gff for
MXO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscp-RA | 71..697 | 9..635 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:35 Download gff for
MXO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15265661..15265690 | 9..38 | 100 | -> | Plus |
| 3R | 15265927..15266370 | 39..482 | 100 | -> | Plus |
| 3R | 15266433..15266585 | 483..635 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:28 Download gff for
MXO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11091383..11091412 | 9..38 | 100 | -> | Plus |
| arm_3R | 11091649..11092092 | 39..482 | 100 | -> | Plus |
| arm_3R | 11092155..11092307 | 483..635 | 100 | | Plus |
