MXO02976.5prime Sequence
705 bp (705 high quality bases) assembled on 2007-05-15
> MXO02976.5prime
CAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGTACGGCCTA
CTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTCTTCTCCTG
TGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAGCTATGGGT
CGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGGGCATGTAC
GTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTAATTTGCAG
TGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTTCACGGCGA
TGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCGACCTCTTC
GAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCACAGCCTCTT
CGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGAGGAGCACG
GCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCAAGCCGGCG
CACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACTCTGAGAAT
GCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGCCCTCGAGT
TTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCAAGTATGCC
AAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCAAGCTTTCT
AGACC
MXO02976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12143-PA | 684 | Tsp42Ej-RA | 1..681 | 9..689 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ej-RA | 1116 | CG12143-RA | 341..1023 | 7..689 | 3415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7041785..7042147 | 237..599 | 1815 | 100 | Plus |
| 2R | 25286936 | 2R | 7041568..7041730 | 74..236 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7042578..7042669 | 598..689 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 7040476..7040543 | 7..74 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:06 has no hits.
MXO02976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:01 Download gff for
MXO02976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12143-PA | 1..684 | 9..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:51 Download gff for
MXO02976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ej-RA | 335..1023 | 1..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:53 Download gff for
MXO02976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ej-RA | 335..1023 | 1..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:53 Download gff for
MXO02976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7040470..7040543 | 1..74 | 94 | -> | Plus |
| 2R | 7041569..7041730 | 75..236 | 100 | -> | Plus |
| 2R | 7041785..7042147 | 237..599 | 100 | -> | Plus |
| 2R | 7042580..7042669 | 600..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:51 Download gff for
MXO02976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2927975..2928048 | 1..74 | 94 | -> | Plus |
| arm_2R | 2929074..2929235 | 75..236 | 100 | -> | Plus |
| arm_2R | 2929290..2929652 | 237..599 | 100 | -> | Plus |
| arm_2R | 2930085..2930174 | 600..689 | 100 | | Plus |
