MXO02978.5prime Sequence
889 bp (744 high quality bases) assembled on 2007-05-15
> MXO02978.5prime
CAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGATGGTCGTG
ACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTGCTCGGCCA
GGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGATCGCGCCCT
GCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCGAGACCACC
GATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGCAAGAGTCC
CATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAAGCTGCAGG
GCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCCACAACAGC
AGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGAGCGGGACT
GACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCCCTCGCAGG
CTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACCACAATAAA
ATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACCCTGGAGAT
TCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGAGGCTTTCC
GAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCAACGATCTT
ACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTAAAGAAACT
GGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGATTTCGAAG
GCTTGCAGAGCCTGAACTCATTGATTTTGGCCCACAACATGATCACCACC
GTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCCTTGGAGCT
GGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTT
MXO02978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-PA | 1413 | CG14762-RA | 1..881 | 9..889 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..1717 | 8..889 | 4395 | 99.9 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..1717 | 8..889 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 391..8 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 613..390 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011657..8011797 | 889..749 | 690 | 99.3 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 751..614 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:26 has no hits.
MXO02978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:23 Download gff for
MXO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-PA | 1..881 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:11 Download gff for
MXO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1717 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:32 Download gff for
MXO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1717 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:32 Download gff for
MXO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8012060..8012282 | 391..613 | 100 | <- | Minus |
| 2R | 8011657..8011795 | 751..889 | 99 | <- | Minus |
| 2R | 8011866..8012002 | 614..750 | 100 | <- | Minus |
| 2R | 8012347..8012732 | 1..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:11 Download gff for
MXO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899162..3899300 | 751..889 | 99 | <- | Minus |
| arm_2R | 3899371..3899507 | 614..750 | 100 | <- | Minus |
| arm_2R | 3899565..3899787 | 391..613 | 100 | <- | Minus |
| arm_2R | 3899852..3900237 | 1..390 | 98 | | Minus |
