MXO02981.5prime Sequence
585 bp (585 high quality bases) assembled on 2007-05-15
> MXO02981.5prime
CAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAG
CTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCACTTCGGTCA
GGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTCCCGCCCCA
CAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACAGCCTGCAG
AAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAGTTCGAGGT
CATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGTCAAGGTGG
CCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGCAGGACGAG
CACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTGCCAAGTGA
TGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGGCCTGCTGA
CCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTGAACGCCTT
GTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAACGCCAAGAA
GGTGGAGACCTCCACCGCCGCAAGCTTTCTAGACC
MXO02981.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4533-PA | 564 | l(2)efl-RA | 1..561 | 9..569 | 2805 | 100 | Plus |
| CG4533-PB | 438 | l(2)efl-RB | 1..392 | 9..400 | 1960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)efl-RC | 741 | CG4533-RC | 72..632 | 9..569 | 2805 | 100 | Plus |
| l(2)efl-RA | 738 | CG4533-RA | 69..629 | 9..569 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23684991..23685382 | 400..9 | 1960 | 100 | Minus |
| 2R | 25286936 | 2R | 23684760..23684932 | 569..397 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:06 has no hits.
MXO02981.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:16 Download gff for
MXO02981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4533-PA | 1..564 | 9..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:00 Download gff for
MXO02981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)efl-RA | 69..629 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:14 Download gff for
MXO02981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)efl-RA | 69..629 | 9..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:14 Download gff for
MXO02981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23684760..23684932 | 397..569 | 100 | <- | Minus |
| 2R | 23684995..23685387 | 1..396 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:00 Download gff for
MXO02981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19572283..19572455 | 397..569 | 100 | <- | Minus |
| arm_2R | 19572518..19572910 | 1..396 | 98 | | Minus |
