MXO02983.5prime Sequence
874 bp (826 high quality bases) assembled on 2007-05-15
> MXO02983.5prime
CAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGCAGCGACTG
GGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTAATATCCGC
CCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGACAGTCAGT
CCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTGATGGAGCC
CGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACTTACCGATA
TAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCTTCATCCGG
CGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCGCCACACTT
ATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAGAAGACCGT
ACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGACCAATCGC
TGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCCGCGCCTCT
GCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCCACACGTGG
AAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTATATACCTGC
TGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTATATTCGGA
GCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTATCCGTTGCT
ATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGACACAAACTC
CCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAACAACTGTGC
CTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTTCACTTGACCTTCTA
CACAATGTACGGTTGGGAATATAT
MXO02983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9865-PA | 1401 | CG9865-RA | 1..827 | 9..835 | 4135 | 100 | Plus |
| CG9865-PB | 1401 | CG9865-RB | 1..827 | 9..835 | 4135 | 100 | Plus |
| CG9865-PA | 1401 | CG9865-RA | 834..866 | 842..874 | 165 | 100 | Plus |
| CG9865-PB | 1401 | CG9865-RB | 834..866 | 842..874 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 812..1677 | 9..874 | 4285 | 99.8 | Plus |
| CG42380-RB | 2320 | CG42380-RB | 873..1738 | 9..874 | 4285 | 99.8 | Plus |
| CG42380-RA | 2259 | CG42380-RA | 812..1677 | 9..874 | 4285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21668123..21668988 | 874..9 | 4255 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:30 has no hits.
MXO02983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:19 Download gff for
MXO02983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-PB | 1..866 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:10 Download gff for
MXO02983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1677 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:36 Download gff for
MXO02983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1677 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:36 Download gff for
MXO02983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21668123..21668992 | 1..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:10 Download gff for
MXO02983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555628..17556497 | 1..874 | 99 | | Minus |
