MXO02989.5prime Sequence
735 bp (734 high quality bases) assembled on 2007-05-15
> MXO02989.5prime
CAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACATCAAGCGC
CGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGCGAACGGGA
GGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGACGACCAAG
ACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCAAGAGCCGA
TGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCGGGAAACTT
TGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAACAGATCCCG
CGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGCTGAGCGAG
GAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTGCTGTATCA
GGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCGTGGCGGTA
AATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCGGGACGTGG
GAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTATGGGCAAA
CGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGACTTTCTGC
CCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGAAGAAGAAC
AACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTAAAGGAGGA
CAACATTGGCTTCCAAATGCTGCAAAAACTCGGCT
MXO02989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-PB | 2499 | CG31550-RB | 1556..2284 | 7..735 | 3645 | 100 | Plus |
| CG31550-PA | 942 | CG31550-RA | 1..727 | 9..735 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RD | 2700 | CG31550-RD | 1661..2389 | 7..735 | 3645 | 100 | Plus |
| CG31550-RC | 2573 | CG31550-RC | 1534..2262 | 7..735 | 3645 | 100 | Plus |
| CG31550-RA | 1849 | CG31550-RA | 810..1538 | 7..735 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5488532..5489032 | 235..735 | 2505 | 100 | Plus |
| 3R | 32079331 | 3R | 5488080..5488308 | 7..235 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:04 has no hits.
MXO02989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:37 Download gff for
MXO02989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-PB | 1551..2284 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:36 Download gff for
MXO02989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RA | 805..1538 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:38 Download gff for
MXO02989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RA | 805..1538 | 1..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:38 Download gff for
MXO02989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5488075..5488307 | 1..234 | 98 | -> | Plus |
| 3R | 5488532..5489032 | 235..735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:36 Download gff for
MXO02989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1313797..1314029 | 1..234 | 98 | -> | Plus |
| arm_3R | 1314254..1314754 | 235..735 | 100 | | Plus |
