MXO02993.5prime Sequence
844 bp (635 high quality bases) assembled on 2007-05-15
> MXO02993.5prime
CAGTCGACATGGCTTCATTTTTCCCCCTTGGCGCCTTGGGAAATGTTTTC
TCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCCAACCTGGC
CTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGATCAACGAAT
CCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAACGCCTCTCC
CAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTGACCGTCCT
GGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCTGGTGGCCC
AGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCAAGAACGAT
CCACCAGCCGCCATGCAGGAGAAGGTTCTCTTTCCGACCCAAATCTGGGC
GGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCAGATGTACA
TGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATCTGGATGCC
ATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATGCCCCCTCA
GCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACATGGCTGCCG
CTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAGGTCCTTTG
CATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTGGAGATCGT
TAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCTGAAGCCCG
GCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCACCTCGACC
TGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGTGT
MXO02993.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3529-PB | 1632 | CG3529-RB | 382..836 | 390..844 | 2275 | 100 | Plus |
| CG3529-PB | 1632 | CG3529-RB | 20..372 | 28..380 | 1765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3529-RD | 2111 | CG3529-RD | 133..968 | 9..844 | 4060 | 99 | Plus |
| CG3529-RC | 2069 | CG3529-RC | 133..968 | 9..844 | 4060 | 99 | Plus |
| CG3529-RB | 2120 | CG3529-RB | 133..968 | 9..844 | 4060 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9448386..9448839 | 74..527 | 2195 | 98.9 | Plus |
| 3L | 28110227 | 3L | 9448900..9449217 | 527..844 | 1590 | 100 | Plus |
| 3L | 28110227 | 3L | 9446996..9447062 | 9..75 | 290 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:26:22 has no hits.
MXO02993.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:38 Download gff for
MXO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-PB | 1..836 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:39 Download gff for
MXO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..968 | 1..844 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:45 Download gff for
MXO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..968 | 1..844 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:45 Download gff for
MXO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9448388..9448839 | 76..527 | 98 | -> | Plus |
| 3L | 9448901..9449217 | 528..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:39 Download gff for
MXO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9442001..9442317 | 528..844 | 100 | | Plus |
| arm_3L | 9441488..9441939 | 76..527 | 98 | -> | Plus |
