MXO02994.5prime Sequence
808 bp (679 high quality bases) assembled on 2007-05-15
> MXO02994.5prime
CAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGAACGGAACA
ACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAGGATGCCAA
GGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAAATTGCCCG
TGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCAAAGTAAAA
GGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAGGATTGTGT
GACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACTGGACCGAC
CCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATAAGCTTGAG
GTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTACAACCAGGC
CAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCGCGTCGTCA
AGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGGATCTCGCC
TGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGTCTGGCTGT
CAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCTTGAATACT
ACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATGATAAACAA
AATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATGCCAGTTCC
CGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGGACGGCTAT
CCCATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGACAGATCAAG
CAGGTCCA
MXO02994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9057-PA | 1059 | Lsd-2-RA | 1..800 | 9..808 | 3975 | 99.8 | Plus |
| CG9057-PC | 1221 | Lsd-2-RC | 1..631 | 9..639 | 3155 | 100 | Plus |
| CG9057-PB | 1008 | Lsd-2-RB | 1..631 | 9..639 | 3155 | 100 | Plus |
| CG9057-PC | 1221 | Lsd-2-RC | 844..962 | 690..808 | 570 | 99.1 | Plus |
| CG9057-PB | 1008 | Lsd-2-RB | 632..749 | 691..808 | 565 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-2-RA | 2148 | CG9057-RA | 280..1080 | 8..808 | 3990 | 99.9 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 1145..1262 | 691..808 | 575 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15073933..15074376 | 643..200 | 2205 | 99.8 | Minus |
| X | 23542271 | X | 15075747..15075941 | 202..8 | 975 | 100 | Minus |
| X | 23542271 | X | 15072531..15072648 | 808..691 | 575 | 99.2 | Minus |
| X | 23542271 | X | 15073341..15073392 | 690..639 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:41 has no hits.
MXO02994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:32 Download gff for
MXO02994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9057-PA | 1..799 | 9..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:28 Download gff for
MXO02994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1079 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:57 Download gff for
MXO02994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1079 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:57 Download gff for
MXO02994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15072532..15072648 | 691..807 | 99 | <- | Minus |
| X | 15073341..15073391 | 640..690 | 100 | <- | Minus |
| X | 15073937..15074374 | 202..639 | 100 | <- | Minus |
| X | 15075748..15075946 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:28 Download gff for
MXO02994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14966565..14966681 | 691..807 | 99 | <- | Minus |
| arm_X | 14967374..14967424 | 640..690 | 100 | <- | Minus |
| arm_X | 14967970..14968407 | 202..639 | 100 | <- | Minus |
| arm_X | 14969781..14969979 | 1..201 | 98 | | Minus |
