MXO02995.5prime Sequence
837 bp (772 high quality bases) assembled on 2007-05-15
> MXO02995.5prime
CAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCGCGCCACAT
GCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCA
AAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACC
ACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTC
GGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAA
TGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACG
ATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTT
AACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAA
CTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCG
ACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATC
AAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCT
GCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGC
TGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCG
TGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACT
GCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGG
GCATGGCCTTCTTCAAATGCGTGAGATGTTCTTCGAGGACAACATCGACC
ATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTAC
MXO02995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5684-PA | 894 | CG5684-RA | 1..759 | 9..767 | 3795 | 100 | Plus |
| CG5684-PC | 882 | CG5684-RC | 1..747 | 21..767 | 3735 | 100 | Plus |
| CG5684-PB | 882 | CG5684-RB | 1..747 | 21..767 | 3735 | 100 | Plus |
| CG5684-PA | 894 | CG5684-RA | 758..830 | 765..837 | 365 | 100 | Plus |
| CG5684-PC | 882 | CG5684-RC | 746..818 | 765..837 | 365 | 100 | Plus |
| CG5684-PB | 882 | CG5684-RB | 746..818 | 765..837 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pop2-RA | 1688 | CG5684-RA | 322..1151 | 9..837 | 4125 | 99.9 | Plus |
| Pop2-RB | 1893 | CG5684-RB | 536..1356 | 18..837 | 4080 | 99.9 | Plus |
| Pop2-RC | 1827 | CG5684-RC | 470..1290 | 18..837 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12000282..12000692 | 767..357 | 2055 | 100 | Minus |
| 3L | 28110227 | 3L | 12000750..12001091 | 358..17 | 1710 | 100 | Minus |
| 3L | 28110227 | 3L | 11998935..11998998 | 837..774 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:27:38 has no hits.
MXO02995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:10:41 Download gff for
MXO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5684-PA | 1..830 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:27 Download gff for
MXO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1151 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:26 Download gff for
MXO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1151 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:26 Download gff for
MXO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11998935..11998996 | 776..837 | 100 | <- | Minus |
| 3L | 12000273..12000690 | 359..775 | 99 | <- | Minus |
| 3L | 12000750..12001091 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:27 Download gff for
MXO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11992035..11992096 | 776..837 | 100 | <- | Minus |
| arm_3L | 11993373..11993790 | 359..775 | 99 | <- | Minus |
| arm_3L | 11993850..11994191 | 17..358 | 100 | | Minus |
