MXO03002.5prime Sequence
822 bp (781 high quality bases) assembled on 2007-05-24
> MXO03002.5prime
CAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAATCAACTAAT
CCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCGGGTCGAAT
GATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGAAAATTTCC
GTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCAAACCGCTC
CACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTCGTCGTCCA
GAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAGCATCTACG
GACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACGAAGAGGGC
GTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAACTCGCAGTT
TTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAACGTAGTCG
TAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGGAACAAAAC
TGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGGGACTGCGG
AGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGACGAGACGA
CGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGCTCGACAAG
TTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGCCAATCGGG
CAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGCAAAATATC
GCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCGGTTGGCAG
CAGCTGAATCCTCTCAAAAACA
MXO03002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8336-PB | 1152 | CG8336-RB | 1..812 | 9..820 | 4060 | 100 | Plus |
| CG8336-PA | 1152 | CG8336-RA | 1..812 | 9..820 | 4060 | 100 | Plus |
| CG8336-PC | 1152 | CG8336-RC | 1..812 | 9..820 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8336-RD | 1395 | CG8336-RD | 145..956 | 9..820 | 4060 | 100 | Plus |
| CG8336-RC | 1445 | CG8336-RC | 195..1006 | 9..820 | 4060 | 100 | Plus |
| CG8336-RA | 1500 | CG8336-RA | 250..1061 | 9..820 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9630818..9631139 | 336..657 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 9630379..9630624 | 90..335 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 9631193..9631356 | 657..820 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9630221..9630302 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:28 has no hits.
MXO03002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:06 Download gff for
MXO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-PC | 1..812 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:45 Download gff for
MXO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-RA | 245..1061 | 1..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:37 Download gff for
MXO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-RA | 245..1061 | 1..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:37 Download gff for
MXO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9630818..9631138 | 336..656 | 100 | -> | Plus |
| 3L | 9631193..9631356 | 657..821 | 99 | | Plus |
| 3L | 9630380..9630624 | 91..335 | 100 | -> | Plus |
| 3L | 9630216..9630302 | 1..90 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:45 Download gff for
MXO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9623316..9623402 | 1..90 | 95 | -> | Plus |
| arm_3L | 9623480..9623724 | 91..335 | 100 | -> | Plus |
| arm_3L | 9623918..9624238 | 336..656 | 100 | -> | Plus |
| arm_3L | 9624293..9624456 | 657..821 | 99 | | Plus |
