MXO03003.5prime Sequence
273 bp (219 high quality bases) assembled on 2007-05-24
> MXO03003.5prime
CAATCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCTCCGTGGCG
GCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTCATCGAGGT
GGTGCGCAATAAGGCCAAAACCTGGACGGTGGGTCGCAATTTCTATGCAT
CCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATCCGGATGCG
CACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGATCTATACGT
GAATAGCGTTGACGAACTTCCCG
MXO03003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10992-PA | 1023 | CG10992-RA | 1..265 | 9..273 | 1275 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CtsB1-RC | 1594 | CG10992-RC | 242..506 | 9..273 | 1295 | 99.2 | Plus |
| CtsB1-RA | 1425 | CG10992-RA | 242..506 | 9..273 | 1295 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13781589..13781734 | 273..128 | 715 | 99.3 | Minus |
| X | 23542271 | X | 13781808..13781929 | 130..9 | 595 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:39 has no hits.
MXO03003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:12 Download gff for
MXO03003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10992-PA | 1..265 | 9..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:47 Download gff for
MXO03003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtsB1-RA | 146..415 | 1..273 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:41 Download gff for
MXO03003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtsB1-RA | 237..506 | 1..273 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:41 Download gff for
MXO03003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13781589..13781733 | 129..273 | 99 | <- | Minus |
| X | 13781810..13781933 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:47 Download gff for
MXO03003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13675622..13675766 | 129..273 | 99 | <- | Minus |
| arm_X | 13675843..13675966 | 1..128 | 96 | | Minus |
