MXO03004.5prime Sequence
767 bp (243 high quality bases) assembled on 2007-05-24
> MXO03004.5prime
CAATCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGACCGTGTGCC
CGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAATTCAACTG
GCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGAGGTGGCCA
TTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCATCCGCGCGTC
AAGATGGCCAATCGCCTGAAGACGTTCGACAAAAAAATTATGGAGGAGAT
CGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGGCTGCGCCG
GAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCAAGGTGGAGCGCGTG
GACTCCGCTTATCGGTCTGCTGTCGGTGTCCAGAGCTCGCTGGCCATGGG
CGCCATCTACAACTTTGGATCCAAGGAGCACAAGCAACGCTATTTGCCCA
GCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTGAACCCAAC
CACGGTAGTGACCCCGCTGGCATGGAGACCAGTGCCAAGTACGATAGCAA
AAGCAAGACATACATCCTGAACGGATCTAAGACGTGAATTACTAGTGCGC
CCATCGCAGACGTCATATTCATATGGGCAAAATGAGAAGATGGCAAGGTA
CTCGGCTTCCTGGTGGATCACAAGATATCCGGCAAGGGTTTGGATACGCC
AAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGACCACGGATATGATCC
TGATGGACAAGGTCCGT
MXO03004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-PA | 1260 | CG9547-RA | 1..759 | 9..767 | 3295 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1441 | CG9547-RA | 95..853 | 9..767 | 3495 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6493970..6494438 | 477..9 | 2225 | 98.3 | Minus |
| 2L | 23513712 | 2L | 6493562..6493855 | 767..474 | 1290 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:47 has no hits.
MXO03004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:16 Download gff for
MXO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-PA | 1..759 | 9..767 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:07 Download gff for
MXO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 85..853 | 2..767 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:13 Download gff for
MXO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 85..853 | 2..767 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:13 Download gff for
MXO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6493562..6493854 | 475..767 | 95 | <- | Minus |
| 2L | 6493973..6494442 | 2..474 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:07 Download gff for
MXO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6493562..6493854 | 475..767 | 95 | <- | Minus |
| arm_2L | 6493973..6494442 | 2..474 | 97 | | Minus |
