Clone MXO03005 Report

Search the DGRC for MXO03005

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:30
Well:5
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptstops-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03005.5prime Sequence

813 bp (783 high quality bases) assembled on 2007-05-24

> MXO03005.5prime
CAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACACCTTCGAG
CAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAGATGTCCT
CGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAGAACTCGC
AGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAGGTACCAC
CGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCAAGTATCA
CAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGAGTCCGGG
ACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTGCGAGAAG
ACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATGCTCCGCA
CTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAGAATGTCC
GGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCTCACATTG
CCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGATTCATTGA
TGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATTGCCCTAC
AGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGGCGCCGCA
CCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTGCTCGACAA
ACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCATGTGCCTCA
AGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAAGCCCCTT
TTATACGCTGCCC

MXO03005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31006-PA 1566 CG31006-RA 228..1033 8..813 4030 100 Plus
CG31006-PB 1338 CG31006-RB 1..805 9..813 4025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
stops-RC 2154 CG31006-RC 543..1348 8..813 4030 100 Plus
stops-RA 1970 CG31006-RA 359..1164 8..813 4030 100 Plus
stops-RB 2109 CG31006-RB 498..1303 8..813 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31168025..31168246 229..8 1110 100 Minus
3R 32079331 3R 31161173..31161331 794..636 795 100 Minus
3R 32079331 3R 31166350..31166460 437..327 555 100 Minus
3R 32079331 3R 31166176..31166282 541..435 535 100 Minus
3R 32079331 3R 31167326..31167429 327..224 520 100 Minus
3R 32079331 3R 31163540..31163638 637..539 495 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:12:19 has no hits.

MXO03005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:21 Download gff for MXO03005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31006-PA 220..1033 1..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:59 Download gff for MXO03005.5prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 487..1300 1..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:46 Download gff for MXO03005.5prime
Subject Subject Range Query Range Percent Splice Strand
stops-RB 490..1303 1..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:46 Download gff for MXO03005.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31161058..31161076 795..813 100 <- Minus
3R 31161173..31161329 638..794 100 <- Minus
3R 31163540..31163635 542..637 100 <- Minus
3R 31166176..31166279 438..541 100 <- Minus
3R 31166350..31166459 328..437 100 <- Minus
3R 31167326..31167425 228..327 100 <- Minus
3R 31168027..31168251 1..227 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:59 Download gff for MXO03005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26986780..26986798 795..813 100 <- Minus
arm_3R 26986895..26987051 638..794 100 <- Minus
arm_3R 26989262..26989357 542..637 100 <- Minus
arm_3R 26991898..26992001 438..541 100 <- Minus
arm_3R 26992072..26992181 328..437 100 <- Minus
arm_3R 26993048..26993147 228..327 100 <- Minus
arm_3R 26993749..26993973 1..227 98   Minus