MXO03005.5prime Sequence
813 bp (783 high quality bases) assembled on 2007-05-24
> MXO03005.5prime
CAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACACCTTCGAG
CAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAGATGTCCT
CGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAGAACTCGC
AGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAGGTACCAC
CGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCAAGTATCA
CAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGAGTCCGGG
ACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTGCGAGAAG
ACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATGCTCCGCA
CTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAGAATGTCC
GGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCTCACATTG
CCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGATTCATTGA
TGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATTGCCCTAC
AGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGGCGCCGCA
CCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTGCTCGACAA
ACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCATGTGCCTCA
AGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAAGCCCCTT
TTATACGCTGCCC
MXO03005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31006-PA | 1566 | CG31006-RA | 228..1033 | 8..813 | 4030 | 100 | Plus |
CG31006-PB | 1338 | CG31006-RB | 1..805 | 9..813 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stops-RC | 2154 | CG31006-RC | 543..1348 | 8..813 | 4030 | 100 | Plus |
stops-RA | 1970 | CG31006-RA | 359..1164 | 8..813 | 4030 | 100 | Plus |
stops-RB | 2109 | CG31006-RB | 498..1303 | 8..813 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31168025..31168246 | 229..8 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 31161173..31161331 | 794..636 | 795 | 100 | Minus |
3R | 32079331 | 3R | 31166350..31166460 | 437..327 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31166176..31166282 | 541..435 | 535 | 100 | Minus |
3R | 32079331 | 3R | 31167326..31167429 | 327..224 | 520 | 100 | Minus |
3R | 32079331 | 3R | 31163540..31163638 | 637..539 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:19 has no hits.
MXO03005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:21 Download gff for
MXO03005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31006-PA | 220..1033 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:59 Download gff for
MXO03005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 487..1300 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:46 Download gff for
MXO03005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stops-RB | 490..1303 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:46 Download gff for
MXO03005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31161058..31161076 | 795..813 | 100 | <- | Minus |
3R | 31161173..31161329 | 638..794 | 100 | <- | Minus |
3R | 31163540..31163635 | 542..637 | 100 | <- | Minus |
3R | 31166176..31166279 | 438..541 | 100 | <- | Minus |
3R | 31166350..31166459 | 328..437 | 100 | <- | Minus |
3R | 31167326..31167425 | 228..327 | 100 | <- | Minus |
3R | 31168027..31168251 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:59 Download gff for
MXO03005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26986780..26986798 | 795..813 | 100 | <- | Minus |
arm_3R | 26986895..26987051 | 638..794 | 100 | <- | Minus |
arm_3R | 26989262..26989357 | 542..637 | 100 | <- | Minus |
arm_3R | 26991898..26992001 | 438..541 | 100 | <- | Minus |
arm_3R | 26992072..26992181 | 328..437 | 100 | <- | Minus |
arm_3R | 26993048..26993147 | 228..327 | 100 | <- | Minus |
arm_3R | 26993749..26993973 | 1..227 | 98 | | Minus |