MXO03006.5prime Sequence
891 bp (804 high quality bases) assembled on 2007-05-24
> MXO03006.5prime
CAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCCTCCTGCTG
CTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTGGAGATCTT
TGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCATGGGCATCA
ACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCACCCTGTCC
ATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAACATCCAGTT
CCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTCGCGCCGAG
AGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGAAGTCTGCC
CTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAGGGCGCCTT
TATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGCCTGGGCGG
CCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCACCAAGCTG
AAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTGATCCTTAG
CGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCAGATCCCCT
TGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCAGCAAGGCC
AACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAACTGGAGGC
CGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCAGGCGCGCC
TTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGAACAGCAAG
GCTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAGATTCAGAC
TCGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCC
MXO03006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-PA | 1569 | CG7556-RA | 1..883 | 9..891 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 152..1034 | 9..891 | 4415 | 100 | Plus |
| CG7556-RA | 2005 | CG7556-RA | 152..1034 | 9..891 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19178992..19179679 | 696..9 | 3410 | 99.7 | Minus |
| X | 23542271 | X | 19178045..19178247 | 891..689 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:26 has no hits.
MXO03006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:26 Download gff for
MXO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-PA | 1..883 | 9..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:53 Download gff for
MXO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1034 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:02 Download gff for
MXO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1034 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:02 Download gff for
MXO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19178045..19178247 | 689..891 | 100 | <- | Minus |
| X | 19179000..19179683 | 1..688 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:53 Download gff for
MXO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19072078..19072280 | 689..891 | 100 | <- | Minus |
| arm_X | 19073033..19073716 | 1..688 | 99 | | Minus |
