Clone MXO03008 Report

Search the DGRC for MXO03008

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:30
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMfap1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03008.5prime Sequence

824 bp (731 high quality bases) assembled on 2007-05-24

> MXO03008.5prime
CAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTGGGATCCAG
AGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAATTGTCCAT
GCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACCCGACTACG
CCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACTTCATTGAC
ACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAGCTGGAGCT
CTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGCGGGTGAGG
GCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCCGAAGATTG
CGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGGAGGGAACG
CCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAGCGAAGACG
AGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCACCAATAAG
ATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGCGACACAGA
GCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCAGCAGCAGC
GCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGGAATCGTCC
GAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAGGAGGACAA
CGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCGTGCCACCA
TCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGGAGGCGGAG
GCCAAGCGGGCAGCCAAGGAGCGC

MXO03008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1017-PA 1437 CG1017-RA 1..816 9..824 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 109..924 9..824 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942052 86..824 3695 100 Plus
3L 28110227 3L 1941176..1941256 9..89 405 100 Plus
Blast to na_te.dros performed 2014-11-28 19:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1133 745..822 108 61.5 Plus

MXO03008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:35 Download gff for MXO03008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 1..816 9..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:50 Download gff for MXO03008.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..924 1..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:44 Download gff for MXO03008.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..924 1..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:44 Download gff for MXO03008.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1941172..1941254 1..87 95 -> Plus
3L 1941316..1942052 88..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:50 Download gff for MXO03008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941172..1941254 1..87 95 -> Plus
arm_3L 1941316..1942052 88..824 100   Plus