MXO03008.5prime Sequence
824 bp (731 high quality bases) assembled on 2007-05-24
> MXO03008.5prime
CAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTGGGATCCAG
AGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAATTGTCCAT
GCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACCCGACTACG
CCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACTTCATTGAC
ACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAGCTGGAGCT
CTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGCGGGTGAGG
GCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCCGAAGATTG
CGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGGAGGGAACG
CCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAGCGAAGACG
AGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCACCAATAAG
ATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGCGACACAGA
GCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCAGCAGCAGC
GCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGGAATCGTCC
GAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAGGAGGACAA
CGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCGTGCCACCA
TCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGGAGGCGGAG
GCCAAGCGGGCAGCCAAGGAGCGC
MXO03008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1017-PA | 1437 | CG1017-RA | 1..816 | 9..824 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-RA | 1682 | CG1017-RA | 109..924 | 9..824 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1941314..1942052 | 86..824 | 3695 | 100 | Plus |
3L | 28110227 | 3L | 1941176..1941256 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1057..1133 | 745..822 | 108 | 61.5 | Plus |
MXO03008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:35 Download gff for
MXO03008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-PA | 1..816 | 9..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:50 Download gff for
MXO03008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 105..924 | 1..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:44 Download gff for
MXO03008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 105..924 | 1..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:44 Download gff for
MXO03008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1941172..1941254 | 1..87 | 95 | -> | Plus |
3L | 1941316..1942052 | 88..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:50 Download gff for
MXO03008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1941172..1941254 | 1..87 | 95 | -> | Plus |
arm_3L | 1941316..1942052 | 88..824 | 100 | | Plus |