MXO03009.5prime Sequence
803 bp (715 high quality bases) assembled on 2007-05-24
> MXO03009.5prime
CAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCCGTTCTACA
CTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGAATTCCAGC
TTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAACACCTGCA
ACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTGATAAGGGG
CTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTTGGCGGCAA
GATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCTCGGAGTGG
GTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGGCGGTTGTG
GGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTCATCGACGA
GGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCGAGCACTTC
AGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGTATCCGGAG
CAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAATGTGAACAA
GCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTACGGATCCA
CAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAATCACAGAAT
TTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACGCCATCCAT
TTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGTTTCAGTCG
AAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACTCCTTCCTC
ATG
MXO03009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4439-PA | 1605 | CG4439-RA | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG4750-PA | 1581 | CG4750-RA | 592..695 | 627..730 | 170 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap8-RA | 2055 | CG4439-RA | 218..1012 | 9..803 | 3975 | 100 | Plus |
| loopin-1-RC | 2078 | CG4750-RC | 591..956 | 438..803 | 600 | 77.9 | Plus |
| loopin-1-RA | 2022 | CG4750-RA | 657..1022 | 438..803 | 600 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16491495..16492190 | 108..803 | 3480 | 100 | Plus |
| 2R | 25286936 | 2R | 16535635..16535964 | 474..803 | 585 | 78.5 | Plus |
| 2R | 25286936 | 2R | 16491317..16491420 | 9..112 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 13597183..13597621 | 334..772 | 500 | 74.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:40 has no hits.
MXO03009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:39 Download gff for
MXO03009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4439-PA | 1..795 | 9..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:56 Download gff for
MXO03009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1012 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:13 Download gff for
MXO03009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1012 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:13 Download gff for
MXO03009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16491311..16491418 | 1..110 | 96 | -> | Plus |
| 2R | 16491498..16492190 | 111..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:56 Download gff for
MXO03009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12378816..12378923 | 1..110 | 96 | -> | Plus |
| arm_2R | 12379003..12379695 | 111..803 | 100 | | Plus |
