MXO03010.5prime Sequence
804 bp (707 high quality bases) assembled on 2007-05-24
> MXO03010.5prime
CAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCAGCAAGACG
CCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGGAGGTCGAA
GTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGAGGACTCCT
CGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGAAGCGGGAG
GAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCATGTGCCCAA
GGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGGAGATCGAG
TGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAGTCATCCAG
ATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACGTATCCGCT
GCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGTTGGCGGCG
TGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGACCCACAAG
AGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTCTGCTACTG
CGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTTC
ATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTAACAGGGGA
TTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCATCCGGAGGT
ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGCTGATCCCG
TGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCTTCTTCTGC
TTCA
MXO03010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-PA | 1386 | CG9747-RA | 1..796 | 9..804 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 2318 | CG9747-RB | 512..1307 | 9..804 | 3980 | 100 | Plus |
| CG9747-RA | 2138 | CG9747-RA | 332..1127 | 9..804 | 3980 | 100 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 564..685 | 579..700 | 265 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30190318..30190741 | 432..9 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 30186581..30186824 | 804..561 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 30187389..30187519 | 563..433 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 12436889..12436977 | 588..676 | 250 | 85.4 | Plus |
| 3R | 32079331 | 3R | 12446124..12446221 | 579..676 | 250 | 83.7 | Plus |
| 3R | 32079331 | 3R | 30197376..30197452 | 676..600 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:48 has no hits.
MXO03010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:44 Download gff for
MXO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-PA | 1..795 | 9..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:35 Download gff for
MXO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 339..1133 | 9..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:00 Download gff for
MXO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 332..1126 | 9..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:00 Download gff for
MXO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30186582..30186821 | 564..803 | 100 | <- | Minus |
| 3R | 30187389..30187519 | 433..563 | 100 | <- | Minus |
| 3R | 30190318..30190741 | 9..432 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:35 Download gff for
MXO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26012304..26012543 | 564..803 | 100 | <- | Minus |
| arm_3R | 26013111..26013241 | 433..563 | 100 | <- | Minus |
| arm_3R | 26016040..26016463 | 9..432 | 100 | | Minus |
