MXO03012.5prime Sequence
916 bp (778 high quality bases) assembled on 2007-05-24
> MXO03012.5prime
CAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGGTCATCGGT
TATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTTGAGGAAAG
GAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATATGGCTGCAG
CGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGTTCTACGAA
CGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGCACACCTAT
GATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGTAAAGGACT
TTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACGATCGCCTG
TTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAGCACATGAG
AAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAACATGTTCA
CCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGGACAGCTCT
TCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATGAAGGTGAT
GTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATTCGGGCTAA
AGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGATCGGGCAG
TCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATGCTGTCCAC
CTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTTCGACTCCG
CCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGCAGTACCGC
GAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTGATGGAGGC
CAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGTGGCCCAGT
GCTTCATTTTCTTCTT
MXO03012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4486-PA | 1518 | Cyp9b2-RA | 1..908 | 9..916 | 4540 | 100 | Plus |
| CG4485-PA | 1518 | Cyp9b1-RA | 736..908 | 744..916 | 465 | 90.7 | Plus |
| CG4485-PA | 1518 | Cyp9b1-RA | 406..464 | 414..472 | 220 | 94.9 | Plus |
| CG4485-PA | 1518 | Cyp9b1-RA | 251..315 | 259..323 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9b2-RA | 1667 | CG4486-RA | 51..958 | 9..916 | 4540 | 100 | Plus |
| Cyp9b1-RA | 1752 | CG4485-RA | 131..939 | 108..916 | 1555 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7131312..7131819 | 722..215 | 2540 | 100 | Minus |
| 2R | 25286936 | 2R | 7131884..7132089 | 214..9 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 7131046..7131239 | 916..723 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 7129029..7129510 | 696..215 | 745 | 77 | Minus |
| 2R | 25286936 | 2R | 7128747..7128939 | 916..724 | 665 | 89.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc4-element | 2791 | Doc4-element DOC4 2791bp | 663..775 | 162..283 | 112 | 59 | Plus |
MXO03012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:22:55 Download gff for
MXO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4486-PA | 1..908 | 9..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:11 Download gff for
MXO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b2-RA | 46..958 | 1..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:17 Download gff for
MXO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b2-RA | 46..958 | 1..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:17 Download gff for
MXO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7131884..7132094 | 1..214 | 98 | | Minus |
| 2R | 7131046..7131239 | 723..916 | 100 | <- | Minus |
| 2R | 7131312..7131819 | 215..722 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:11 Download gff for
MXO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3019389..3019599 | 1..214 | 98 | | Minus |
| arm_2R | 3018551..3018744 | 723..916 | 100 | <- | Minus |
| arm_2R | 3018817..3019324 | 215..722 | 100 | <- | Minus |
