MXO03014.5prime Sequence
845 bp (711 high quality bases) assembled on 2007-05-24
> MXO03014.5prime
CAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCTCCGCCCAG
CGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAGATGACCGT
GCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCGCGACGACC
GCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTGCTTACAAG
GTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTCATCGACAC
GCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGCTGCCATGG
CCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCTCCATGCAG
GCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTACATGTCTGC
CGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGGAGCCGCTT
CCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGTACGCCCAC
TGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGATGCCCGCGG
ACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTTCCTGGAGA
ATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACGTGGCCGAC
AAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGGCCGGGCAA
GGACATTACCCTGGTGGCGCATTCTCAGGCGGTGGAGACATCGCTTCTGG
CAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCATTAACCTG
CACTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCTGTA
MXO03014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-PA | 1098 | CG11876-RA | 1..837 | 9..845 | 4110 | 99.6 | Plus |
| CG11876-PD | 1098 | CG11876-RD | 1..837 | 9..845 | 4110 | 99.6 | Plus |
| CG11876-PC | 822 | CG11876-RC | 1..354 | 9..362 | 1770 | 100 | Plus |
| CG11876-PB | 822 | CG11876-RB | 1..354 | 9..362 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RD | 1386 | CG11876-RD | 51..887 | 9..845 | 4140 | 99.6 | Plus |
| CG11876-RA | 1455 | CG11876-RA | 120..956 | 9..845 | 4140 | 99.6 | Plus |
| CG11876-RB | 1025 | CG11876-RB | 154..507 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29115094..29115508 | 363..777 | 2045 | 99.5 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 9..202 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114155 | 199..362 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29115566..29115637 | 774..845 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:12 has no hits.
MXO03014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:05 Download gff for
MXO03014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-PD | 1..836 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:15 Download gff for
MXO03014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..955 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:44 Download gff for
MXO03014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..955 | 1..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:44 Download gff for
MXO03014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113248..29113449 | 1..200 | 98 | -> | Plus |
| 3R | 29113994..29114155 | 201..362 | 100 | -> | Plus |
| 3R | 29115094..29115505 | 363..774 | 99 | -> | Plus |
| 3R | 29115567..29115636 | 775..844 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:15 Download gff for
MXO03014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938970..24939171 | 1..200 | 98 | -> | Plus |
| arm_3R | 24939716..24939877 | 201..362 | 100 | -> | Plus |
| arm_3R | 24940816..24941227 | 363..774 | 99 | -> | Plus |
| arm_3R | 24941289..24941358 | 775..844 | 98 | | Plus |
