MXO03016.5prime Sequence
914 bp (736 high quality bases) assembled on 2007-05-24
> MXO03016.5prime
CAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCCCAGATTCC
GACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAGGTGAAACG
CTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTACGATGCAG
TCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCAAACTCGTC
CTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTGATGCTCGC
CTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGAAAGGGCAG
GGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGATGATGGCC
TGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATTGTGGGCCT
GCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATATGGAATGA
CACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTGTGCGTCTG
CTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGCTGCACTGC
CATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAAGCTGTTGG
TGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCTACACGCCC
ACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAGATCCTGCC
GCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGGCTACAACA
CGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATTGCCCGGAA
TATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATTGGCAACAT
GGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTTCCTCGTCA
TGGATGAGCAGTCA
MXO03016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2183-PA | 1386 | CG2183-RA | 1..906 | 9..914 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gasz-RA | 1908 | CG2183-RA | 96..1001 | 9..914 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8168188..8169011 | 91..914 | 4120 | 100 | Plus |
| 2R | 25286936 | 2R | 8168043..8168128 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:52 has no hits.
MXO03016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:15 Download gff for
MXO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-PA | 1..905 | 9..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:38 Download gff for
MXO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-RA | 96..1000 | 9..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:02 Download gff for
MXO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gasz-RA | 96..1000 | 9..913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:02 Download gff for
MXO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8168043..8168126 | 9..92 | 100 | -> | Plus |
| 2R | 8168190..8169010 | 93..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:38 Download gff for
MXO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4055548..4055631 | 9..92 | 100 | -> | Plus |
| arm_2R | 4055695..4056515 | 93..913 | 100 | | Plus |
