MXO03018.5prime Sequence
867 bp (812 high quality bases) assembled on 2007-05-24
> MXO03018.5prime
CAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCTCCGAGGAG
CACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTAATGCGGGA
TGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGGAGCCTTCC
GAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATATGTATTCA
AAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAATCAGATCC
GCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACACCACCGGCA
TTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACGGCGACAAG
ATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGCCAGAGCAC
GGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCTGTCCTCGG
TGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACCTGCAGCAC
CTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGACACCGGCAA
AAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAGCTTTCCCT
ACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGAAACGACGT
CTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTGCGTCGCCA
CATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCCCCATCCAG
GTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGCAGGACATC
ACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATGCTGCTGGC
ACCGGACAACCTTGTCT
MXO03018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6668-PA | 1626 | atl-RA | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG6668-PB | 1626 | atl-RB | 1..859 | 9..867 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 2907 | CG6668-RC | 275..1133 | 9..867 | 4295 | 100 | Plus |
| atl-RB | 3207 | CG6668-RB | 575..1433 | 9..867 | 4295 | 100 | Plus |
| atl-RA | 2889 | CG6668-RA | 257..1115 | 9..867 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24632155..24632820 | 202..867 | 3330 | 100 | Plus |
| 3R | 32079331 | 3R | 24631897..24632091 | 9..203 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:15 has no hits.
MXO03018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:25 Download gff for
MXO03018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6668-PB | 1..859 | 9..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:17 Download gff for
MXO03018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1115 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:00 Download gff for
MXO03018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1115 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:00 Download gff for
MXO03018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24631893..24632091 | 1..203 | 98 | -> | Plus |
| 3R | 24632157..24632820 | 204..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:17 Download gff for
MXO03018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20457615..20457813 | 1..203 | 98 | -> | Plus |
| arm_3R | 20457879..20458542 | 204..867 | 100 | | Plus |
