MXO03021.5prime Sequence
878 bp (763 high quality bases) assembled on 2007-05-24
> MXO03021.5prime
CAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGGTTCATCCG
CTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTATTCACGGA
GATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGGAGGTGGAA
ATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACAGCTCCAAG
AAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGATCACGAGG
ACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCATTGCCATGG
CGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGCTCCTGGAG
GCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCACTGATCGA
GGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAGCAACCTCT
TCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCATTGCTGTG
CCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTGGAGGGCAT
TGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCACATCGTCG
AATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGGTGGCTGTT
CTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACGGCCGTCTT
GCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTACGAGCCTGG
AGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCGATTATCTT
GTTGAGGAAATGTTACGAATTCATTCAACGAATTTGGACAGACCATGCTC
TTTGAGATGAACCGGCTGGGCATGCTGG
MXO03021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5282-PA | 1356 | CG5282-RA | 1..802 | 9..810 | 3985 | 99.8 | Plus |
| CG5282-PA | 1356 | CG5282-RA | 801..871 | 808..878 | 330 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5282-RA | 1543 | CG5282-RA | 113..983 | 9..878 | 4300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20425126..20425959 | 841..9 | 4105 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:41 has no hits.
MXO03021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:35 Download gff for
MXO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-PA | 1..871 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:57 Download gff for
MXO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..983 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:12 Download gff for
MXO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..983 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:12 Download gff for
MXO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20425037..20425073 | 842..878 | 97 | <- | Minus |
| 3L | 20425126..20425970 | 1..841 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:57 Download gff for
MXO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20418137..20418173 | 842..878 | 97 | <- | Minus |
| arm_3L | 20418226..20419070 | 1..841 | 99 | | Minus |
