MXO03022.5prime Sequence
903 bp (782 high quality bases) assembled on 2007-05-24
> MXO03022.5prime
CAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACGACTTTAAG
GCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGACGAGACGGA
CGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAACCGTCAAAT
TGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTG
GCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAA
GTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATT
TCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAG
GACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGT
GCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGC
ATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTC
ATCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCAT
CATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTA
CCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTG
GCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTACGATACCAT
TATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTT
TGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTG
GAGAAGCTGCGCGAGAACGGCGTGGTCAACATCGAGATGGAGAGCACCAT
CTTTGCGGCCCTGACCCAACATGCCGGCATCAAGGCAGCGGGTGGTGTGT
GTC
MXO03022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-PA | 1107 | CG6330-RA | 1..883 | 9..891 | 4390 | 99.8 | Plus |
CG6330-PB | 1044 | CG6330-RB | 57..820 | 128..891 | 3795 | 99.8 | Plus |
CG3788-PA | 1137 | CG3788-RA | 472..518 | 459..505 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1541 | CG6330-RA | 132..1026 | 8..903 | 4440 | 99.8 | Plus |
CG6330-RB | 2075 | CG6330-RB | 355..1129 | 128..903 | 3840 | 99.7 | Plus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 377..553 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26951072..26951428 | 599..243 | 1755 | 99.4 | Minus |
3R | 32079331 | 3R | 26950707..26951009 | 903..600 | 1455 | 99.3 | Minus |
3R | 32079331 | 3R | 26951775..26951899 | 251..127 | 625 | 100 | Minus |
3R | 32079331 | 3R | 26953001..26953123 | 130..8 | 615 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 553..377 | 345 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 255..173 | 111 | 60.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 255..173 | 111 | 60.7 | Minus |
MXO03022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:40 Download gff for
MXO03022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PA | 1..894 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:05 Download gff for
MXO03022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 129..1026 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:17 Download gff for
MXO03022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 129..1026 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:17 Download gff for
MXO03022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950707..26951009 | 600..903 | 99 | <- | Minus |
3R | 26951072..26951419 | 252..599 | 100 | <- | Minus |
3R | 26951775..26951898 | 128..251 | 100 | <- | Minus |
3R | 26953004..26953126 | 1..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:05 Download gff for
MXO03022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776429..22776731 | 600..903 | 99 | <- | Minus |
arm_3R | 22776794..22777141 | 252..599 | 100 | <- | Minus |
arm_3R | 22777497..22777620 | 128..251 | 100 | <- | Minus |
arm_3R | 22778726..22778848 | 1..127 | 96 | | Minus |