MXO03024.5prime Sequence
516 bp (382 high quality bases) assembled on 2007-05-24
> MXO03024.5prime
CAGTCGACATGTCGGAGGACAAACAGTCCATCCGCCGGGATAAGGGCACC
AAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGGGACACCTT
CATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTTCCGCCCGC
TGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCATCGGATAC
GTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATGGAGGGCGC
TTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTGCTGGCAGA
TGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGATCACCTGG
GCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCTGTGCTAAAGACCGT
GCCCACCCTGGAGGGTCTGGCCAGCATACCGCTTATCATCCATCCCATTG
ACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGACGGTGCGG
GCAAGCTTTCTAGACC
MXO03024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7772-PA | 495 | CG7772-RA | 1..492 | 9..500 | 2360 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7772-RA | 843 | CG7772-RA | 205..696 | 9..500 | 2400 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17906652..17906879 | 341..114 | 1140 | 100 | Minus |
| X | 23542271 | X | 17906178..17906338 | 500..340 | 760 | 98.1 | Minus |
| X | 23542271 | X | 17906951..17907057 | 115..9 | 520 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:22 has no hits.
MXO03024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:23:49 Download gff for
MXO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7772-PA | 1..495 | 9..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:20 Download gff for
MXO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7772-RA | 196..696 | 1..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:04 Download gff for
MXO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7772-RA | 196..696 | 1..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:04 Download gff for
MXO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17906178..17906337 | 341..500 | 98 | <- | Minus |
| X | 17906653..17906878 | 115..340 | 100 | <- | Minus |
| X | 17906952..17907062 | 1..114 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:20 Download gff for
MXO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17800211..17800370 | 341..500 | 98 | <- | Minus |
| arm_X | 17800686..17800911 | 115..340 | 100 | <- | Minus |
| arm_X | 17800985..17801095 | 1..114 | 95 | | Minus |
