MXO03031.5prime Sequence
730 bp (111 high quality bases) assembled on 2007-05-24
> MXO03031.5prime
CAATCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTATCACTGCTC
GTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGGGGCATACC
GCACGACGAGGTACGCCCGCTTTTCGGAAACATCAAGGACTGGCCAAATA
AGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGTACAAGAAC
TCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGCACTGCTGT
GGTCACCGACATGGAATTGCTCAGGAGGGTGCTGATCAAGGACTTCAGTC
ACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATCCGCTGTCG
GCCACCTTGTTCAGCATCGAGGGGCAGAAGTGGCGTCATCTGCGGCACAC
ACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTTTCCGATTG
TTGTGAAAGTTGGAAAAGAAATGGATAAGGTCTTCAGAAGTAAAACCACT
GCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCACGGTACAC
CGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAACAGCTTGT
ACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCAGGCGATCACCGAC
CATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTTCCCAAGTT
ATCGCGCCGCTTACGTCTGATACTCAATAT
MXO03031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10241-PA | 1506 | Cyp6a17-RA | 1..712 | 9..720 | 3335 | 98.7 | Plus |
| CG10242-PA | 1509 | Cyp6a23-RA | 222..458 | 227..463 | 760 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a17-RB | 1727 | CG10241-RB | 28..749 | 9..730 | 3445 | 98.5 | Plus |
| Cyp6a17-RA | 1546 | CG10241-RA | 28..749 | 9..730 | 3445 | 98.5 | Plus |
| Cyp6a23-RA | 1761 | CG10242-RA | 69..672 | 42..645 | 1370 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14873980..14874701 | 9..730 | 3445 | 98.5 | Plus |
| 2R | 25286936 | 2R | 14875897..14876500 | 42..645 | 1370 | 81.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:32 has no hits.
MXO03031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:15 Download gff for
MXO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10241-PA | 1..722 | 9..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:02 Download gff for
MXO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a17-RA | 22..749 | 1..730 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:53 Download gff for
MXO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a17-RA | 22..749 | 1..730 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:53 Download gff for
MXO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14873974..14874701 | 1..730 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:02 Download gff for
MXO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10761479..10762206 | 1..730 | 97 | | Plus |
