MXO03032.5prime Sequence
821 bp (772 high quality bases) assembled on 2007-05-24
> MXO03032.5prime
CAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATACAGATCCGC
AGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCGGCCACCAA
GCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAAGTCGCCGA
AGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGCCCAGCGCC
AACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTGGCCAACAG
CCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAAGCCATCGA
ATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCAATGGCACC
GCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGACCCAAGGT
GGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGTGCCGGAGT
TCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGGAGAACGTG
CTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTTATGATCTC
GCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGCCAGTCCGG
CCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGAAGGTGGAG
GAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTAACCACCTC
TGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAATGGACACA
GTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGGCCAAGGCC
ATTGAGCAAGTTAACCAGGCA
MXO03032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1623-PB | 1371 | CG1623-RB | 1..813 | 9..821 | 4065 | 100 | Plus |
| CG1623-PD | 1371 | CG1623-RD | 1..813 | 9..821 | 4065 | 100 | Plus |
| CG1623-PA | 1371 | CG1623-RA | 1..813 | 9..821 | 4065 | 100 | Plus |
| CG1623-PC | 1371 | CG1623-RC | 1..813 | 9..821 | 4065 | 100 | Plus |
| CG1623-PE | 1371 | CG1623-RE | 1..813 | 9..821 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 124..939 | 6..821 | 4080 | 100 | Plus |
| hebe-RE | 1825 | CG1623-RE | 129..944 | 6..821 | 4080 | 100 | Plus |
| hebe-RD | 1956 | CG1623-RD | 260..1075 | 6..821 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828985..9829800 | 821..6 | 4080 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 108..273 | 154 | 58 | Plus |
MXO03032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:20 Download gff for
MXO03032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-PE | 1..812 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:24 Download gff for
MXO03032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1074 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:20 Download gff for
MXO03032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1074 | 1..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:20 Download gff for
MXO03032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828986..9829806 | 1..820 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:24 Download gff for
MXO03032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5716491..5717311 | 1..820 | 99 | | Minus |
