MXO03033.5prime Sequence
858 bp (764 high quality bases) assembled on 2007-05-24
> MXO03033.5prime
CAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTTACGGCGGA
GTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGACACGACGAA
GACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTTCTCGCAGC
TGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCCGCGAGGAG
GGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTGAGACAAGC
GACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAAGAAGCTGG
CCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGCGTGTGTGG
AGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCGGCCATTGC
TAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGGGAAGGGAC
AGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAATACGAGGGC
GTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGTGCCGTAGT
TATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCTGCAGTTAA
TGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGAGCTTTATT
GCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTAATCCGGAC
GCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGGAGTGGTCA
CGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACTGTGCTGTA
CAGACTATCAGGAACGAAAGTCTACCCGCCCTGTACAAAGGTTTCATTCC
CACCTGGG
MXO03033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7314-PA | 912 | Bmcp-RA | 1..850 | 9..858 | 4225 | 99.8 | Plus |
| CG7314-PB | 912 | Bmcp-RB | 1..850 | 9..858 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bmcp-RB | 1687 | CG7314-RB | 192..1041 | 9..858 | 4235 | 99.9 | Plus |
| Bmcp-RA | 1618 | CG7314-RA | 192..1041 | 9..858 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11722004..11722418 | 223..637 | 2075 | 100 | Plus |
| 3L | 28110227 | 3L | 11722588..11722748 | 698..858 | 790 | 99.4 | Plus |
| 3L | 28110227 | 3L | 11721316..11721464 | 75..223 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 11721125..11721192 | 9..76 | 340 | 100 | Plus |
| 3L | 28110227 | 3L | 11722465..11722532 | 631..698 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:12 has no hits.
MXO03033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:25 Download gff for
MXO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7314-PB | 1..850 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:17 Download gff for
MXO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bmcp-RA | 184..1041 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:27 Download gff for
MXO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bmcp-RA | 184..1041 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:27 Download gff for
MXO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11721117..11721191 | 1..75 | 94 | -> | Plus |
| 3L | 11721317..11721464 | 76..223 | 100 | -> | Plus |
| 3L | 11722005..11722418 | 224..637 | 100 | -> | Plus |
| 3L | 11722472..11722532 | 638..698 | 100 | -> | Plus |
| 3L | 11722589..11722748 | 699..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:17 Download gff for
MXO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11715105..11715518 | 224..637 | 100 | -> | Plus |
| arm_3L | 11714217..11714291 | 1..75 | 94 | -> | Plus |
| arm_3L | 11714417..11714564 | 76..223 | 100 | -> | Plus |
| arm_3L | 11715572..11715632 | 638..698 | 100 | -> | Plus |
| arm_3L | 11715689..11715848 | 699..858 | 99 | | Plus |
