MXO03036.5prime Sequence
848 bp (725 high quality bases) assembled on 2007-05-24
> MXO03036.5prime
CAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAGTCCAGCGT
CGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGCGGTGGTGA
ATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAAGGAGAACG
ATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATGATCGGCTG
CATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACTGGCCACTT
GGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCGCAGTATGG
CAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAACTGGAAATG
CTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATTGGAGCCCG
ATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGGCATGGACT
ATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGCGATATTGT
GACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTGGAGCTGTA
CGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAAGGCGGAGG
CTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTTGCATGACA
CCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCCTGTGGCAT
TACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCGTCTTCATT
CGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTCTGATGGAG
ATCACCTATTGCGGCACCAATCCCGAGGACAAACCCTTTTTGTTTCTG
MXO03036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32064-PA | 1575 | CG32064-RA | 1..836 | 9..844 | 4155 | 99.8 | Plus |
| CG13340-PA | 1584 | CG13340-RA | 319..372 | 315..368 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 2074 | CG32064-RA | 314..1153 | 9..848 | 4170 | 99.8 | Plus |
| S-Lap3-RD | 2640 | CG32063-RD | 368..1020 | 166..818 | 600 | 73.7 | Plus |
| S-Lap3-RC | 2146 | CG32063-RC | 368..1020 | 166..818 | 600 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10491174..10492013 | 9..848 | 4170 | 99.8 | Plus |
| 3L | 28110227 | 3L | 10466702..10467354 | 166..818 | 565 | 72.4 | Plus |
| 2R | 25286936 | 2R | 13779095..13779636 | 844..303 | 565 | 73.6 | Minus |
| 2R | 25286936 | 2R | 13597189..13597708 | 298..817 | 320 | 70.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:26 has no hits.
MXO03036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:40 Download gff for
MXO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-PA | 1..840 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:54 Download gff for
MXO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 306..1153 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:31 Download gff for
MXO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 306..1153 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:31 Download gff for
MXO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10491166..10492013 | 1..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:54 Download gff for
MXO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10484266..10485113 | 1..848 | 99 | | Plus |
