MXO03039.5prime Sequence
829 bp (800 high quality bases) assembled on 2007-05-24
> MXO03039.5prime
CAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGAAGAACAAG
TGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCACCAGAAGCA
GGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGATCGCCCACA
ATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTAAACCATAC
GAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCACAGATCTC
CGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGAGGATCACA
TCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGTGCAAGTCC
CTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGGGGTCAGAA
GGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACACGTGTTTGA
GCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGAAGGCCAGC
AAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGGTCCAACCA
ATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAAGTTCTTTA
AAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTGGTGCTCTG
CAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCATGTAGCGGT
CTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAATCTGGCCA
AGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGCGCGAGATC
AAGAAGAACGCCCACCTGAGCATCTGCTA
MXO03039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8503-PA | 1542 | CG8503-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8503-RA | 1774 | CG8503-RA | 160..981 | 8..829 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14244126..14244581 | 139..594 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 14244842..14245078 | 593..829 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 14243937..14244069 | 8..140 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:45 has no hits.
MXO03039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:45 Download gff for
MXO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-PA | 1..820 | 9..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:48 Download gff for
MXO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 151..980 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:21 Download gff for
MXO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 151..980 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:21 Download gff for
MXO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14244842..14245077 | 593..828 | 100 | | Plus |
| 2R | 14243928..14244069 | 1..140 | 97 | -> | Plus |
| 2R | 14244128..14244579 | 141..592 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:48 Download gff for
MXO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10131433..10131574 | 1..140 | 97 | -> | Plus |
| arm_2R | 10131633..10132084 | 141..592 | 100 | -> | Plus |
| arm_2R | 10132347..10132582 | 593..828 | 100 | | Plus |
