MXO03041.5prime Sequence
848 bp (756 high quality bases) assembled on 2007-05-24
> MXO03041.5prime
CAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCACCAAGATG
GAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTGGCTAAGGA
GCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGAGATGATGC
TACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTTCTTGCTCA
CGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCCAACTGGAA
CGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTCCCAGCTGA
AGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACGTGGACAAG
ACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTTCGCTCGGT
TACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCTTACTAAGA
TTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAGCTGCCACT
GTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGATAAGCGCGA
GAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTTGAAGGAGG
ATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAAAGTTCTTT
GACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTATCTAATGAT
TCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCATTATCAGG
CCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCGTAGACTCT
GCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGACGATAAGAAAAAG
MXO03041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1100-PA | 1509 | Rpn5-RA | 1..840 | 9..848 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1064 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790615 | 9..848 | 4200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:05 has no hits.
MXO03041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:49 Download gff for
MXO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-PA | 1..840 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:18 Download gff for
MXO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1064 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:22 Download gff for
MXO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1064 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:22 Download gff for
MXO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789772..5790615 | 1..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:18 Download gff for
MXO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615494..1616337 | 1..848 | 99 | | Plus |
