MXO03042.5prime Sequence
939 bp (788 high quality bases) assembled on 2007-05-24
> MXO03042.5prime
CAGTCGACATGGCCACCCTCCTCAGCAACGGACAGCAGTCGGTAATGGCC
AGCACCAGTAATGGTCAGGAGCAGCAACGGCACCAGGACGAACCGGAGCA
GCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCACCGAAACCAGGCGCCA
TGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTGTCACCGAAAGATAAA
CGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTGCGGCGGAAAGACGAC
GGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTAT
TCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGTGGCGGTGTGAAGTTC
TCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCAGGAGAATCTGATCCG
CACCATGGTTCAAATTGAGAACACCTACTTTGAGCTGGGCAACTCCAGCA
ATCGCAACTGTCTGATAATCTGCGATCGCGGCGTTATGGATGCCAGTGCA
TACATATCCAAGGATAAATGGGAAAAGATGATGGCGGGCAATAATTGGAA
TCCCGTGGAGATGCGCGACAATCGTTACAACCAAATCCTGCACTTGGTTT
CGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGACCATGCCTGT
CGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGACTACAAATCCGCCGC
CGCCTGGGTTGGCCATCCCTACTTCGATGTGATCGACAACTCCACCAACT
TCGAGACCAAGATGAATCGCATGATTGAGTCGGTGTGCCAGAAATTGGGC
ATTGATATTGGCGACCGTTTGCAGGCCACGTCGCGCAAGCTGAAATATTT
GGTGGCCCTTTTGCCCGCGGACAGCGAGTTTCCGCCTTTTCAGATTCGAT
GTCGTACATCATTATCTGCAGTCCGCCGGACCCAAGGTG
MXO03042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30118-PA | 1428 | CG30118-RA | 1..878 | 9..886 | 4340 | 99.7 | Plus |
CG30118-PA | 1428 | CG30118-RA | 889..933 | 895..939 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30118-RB | 2030 | CG30118-RB | 519..1454 | 6..939 | 4570 | 99.4 | Plus |
CG30118-RA | 2317 | CG30118-RA | 519..1454 | 6..939 | 4570 | 99.4 | Plus |
CG30118-RC | 2584 | CG30118-RC | 1017..1586 | 372..939 | 2740 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18439734..18439957 | 229..6 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 18431809..18432024 | 852..637 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 18432444..18432586 | 639..497 | 700 | 99.3 | Minus |
2R | 25286936 | 2R | 18432647..18432776 | 501..372 | 650 | 100 | Minus |
2R | 25286936 | 2R | 18438206..18438276 | 298..228 | 355 | 100 | Minus |
2R | 25286936 | 2R | 18431658..18431747 | 939..852 | 310 | 92.2 | Minus |
2R | 25286936 | 2R | 18437575..18437614 | 372..333 | 200 | 100 | Minus |
2R | 25286936 | 2R | 18437940..18437979 | 334..295 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6807 | 23..109 | 135 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6819 | 50..109 | 135 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2862 | 15..117 | 134 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6858 | 23..109 | 133 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2363 | 29..110 | 132 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2460 | 23..148 | 127 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6877 | 50..144 | 126 | 64.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1146 | 23..109 | 125 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2825 | 49..110 | 118 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6765 | 66..109 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2360 | 23..110 | 111 | 63.3 | Plus |
MXO03042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:54 Download gff for
MXO03042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30118-PA | 1..933 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:56 Download gff for
MXO03042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30118-RA | 515..1454 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:26 Download gff for
MXO03042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30118-RA | 515..1454 | 1..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:26 Download gff for
MXO03042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18431658..18431746 | 853..939 | 93 | <- | Minus |
2R | 18431809..18432022 | 639..852 | 100 | <- | Minus |
2R | 18432445..18432581 | 502..638 | 100 | <- | Minus |
2R | 18432647..18432775 | 373..501 | 100 | <- | Minus |
2R | 18437575..18437612 | 335..372 | 100 | <- | Minus |
2R | 18437940..18437977 | 297..334 | 100 | <- | Minus |
2R | 18438208..18438275 | 229..296 | 100 | <- | Minus |
2R | 18439735..18439961 | 1..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:56 Download gff for
MXO03042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14319163..14319251 | 853..939 | 93 | <- | Minus |
arm_2R | 14319314..14319527 | 639..852 | 100 | <- | Minus |
arm_2R | 14319950..14320086 | 502..638 | 100 | <- | Minus |
arm_2R | 14320152..14320280 | 373..501 | 100 | <- | Minus |
arm_2R | 14325080..14325117 | 335..372 | 100 | <- | Minus |
arm_2R | 14325445..14325482 | 297..334 | 100 | <- | Minus |
arm_2R | 14325713..14325780 | 229..296 | 100 | <- | Minus |
arm_2R | 14327240..14327466 | 1..228 | 98 | | Minus |