MXO03043.5prime Sequence
917 bp (748 high quality bases) assembled on 2007-05-24
> MXO03043.5prime
CAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGTTTGACCCC
TTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCTATCTACGA
GCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATCACGTACAC
TGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCAAACCGCTC
GAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGACCCCCTGAA
TCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGACGTAGTAA
CTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGAGTCCGCCG
GGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGTTGCGTACC
GTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGGCTTTAAGG
ATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACCGGAATAAC
AACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGGCAGCGGCA
GCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTTTGAGGACG
ACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATGATGATGAC
GACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAAAATACCGA
GGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCCTGTCAAGA
AGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCGCCTGGGAC
TACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCANGTAATGGCGCGAGA
TCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCACCCATTCCTCATG
CCGTCCTGACTCCCGTT
MXO03043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3825-PA | 954 | CG3825-RA | 1..886 | 9..894 | 4411 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 1597 | CG3825-RA | 365..1273 | 9..917 | 4474 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23976146..23976891 | 754..9 | 3730 | 100 | Minus |
| 2R | 25286936 | 2R | 23975923..23976089 | 917..751 | 764 | 97 | Minus |
Blast to na_te.dros performed 2014-11-28 22:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 563..604 | 623..663 | 108 | 76.2 | Plus |
MXO03043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:24:59 Download gff for
MXO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-PA | 1..909 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:21 Download gff for
MXO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 357..1273 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:09 Download gff for
MXO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 357..1273 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:09 Download gff for
MXO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23975923..23976087 | 753..917 | 97 | <- | Minus |
| 2R | 23976148..23976898 | 1..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:21 Download gff for
MXO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19863446..19863610 | 753..917 | 97 | <- | Minus |
| arm_2R | 19863671..19864421 | 1..752 | 99 | | Minus |
