MXO03046.5prime Sequence
841 bp (772 high quality bases) assembled on 2007-05-24
> MXO03046.5prime
CAGTCGACATGCTCATCCGCCTGCGCTATGGAAGACGCCTGCAGACCTAT
CTGAAGATAGGCGCCTGTGTCCTGGTCGGCCTGTGCTACTTCGCCTTCCT
TTTCCGCGAATCCCTCAATGCATACGAGCACCGGGAGCGGGCTACGGCCG
CGGAATTGGAGGCGGAATCGGAGCCATCAAAGCAGCAGCTCAAGCTAAAG
CGGCAGCAGTTGCAGCGCCAGCGGATATTGGCCAAGCAGCAGGAGCAGGG
AAAGGGCATCGCTGGGGGAAATGCCAGTGCAGGCAGCTCATCCTCCCAAG
CAGCAGCTCCTCCGCCGCCGCCGCCGGCTACCACCCTGAATCCCGTGTAT
GAGTACTCCGAGGAGCTGCACAGTCGCACGGAGCGGGAGCTGCAGAGGAG
GAGCGAGCATCTGGCCGCCGTCTGCGATCGGTATAAGCTGCAGGAAAAGT
ACCCACCGAATCCCTGGGAGTTCTTCGTCTCGCCTGGCCACAACAATCTC
GTCTGGTGCAACGTCTTCAAGGCGGCCAGCAGTACGTGGATGTATTACTT
TAATATATTAGCTGGCTACGATGTGAAGTATCTGCAGCGCACGGAGACGC
AGCCACTGGAGCTGGCCAGAAAGCGTTTTCCACGCCCGGAACTGGGCGAA
CTGATGGAGCTGCTGCCCAGTGCGCTGTCCTTTCTCTTTGTGCGCGATCC
CTTCGAGCGAATCCTGAGCGCCTATCGCAACAAACTGGAGGGCAACAAGA
ACACCTTCTACAAGGCGCTGGGCAACAAGATCGTGCATCGCTACAGGAAG
CGTAATCTGGGCGGACCCTGGCCGCGATGTGGACCCACCTT
MXO03046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14024-PA | 1335 | CG14024-RA | 1..833 | 9..841 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14024-RB | 2616 | CG14024-RB | 283..1115 | 9..841 | 4165 | 100 | Plus |
| CG14024-RA | 1798 | CG14024-RA | 283..1115 | 9..841 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5313386..5313884 | 507..9 | 2495 | 100 | Minus |
| 2L | 23513712 | 2L | 5312812..5313093 | 841..560 | 1410 | 100 | Minus |
| 2L | 23513712 | 2L | 5313269..5313325 | 561..505 | 285 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10363..10463 | 216..311 | 115 | 60.4 | Plus |
MXO03046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:09 Download gff for
MXO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-PA | 1..833 | 9..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:55 Download gff for
MXO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 271..1109 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:33 Download gff for
MXO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 277..1115 | 1..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:33 Download gff for
MXO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5312812..5313091 | 562..841 | 100 | <- | Minus |
| 2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| 2L | 5313388..5313890 | 1..505 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:55 Download gff for
MXO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5312812..5313091 | 562..841 | 100 | <- | Minus |
| arm_2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| arm_2L | 5313388..5313890 | 1..505 | 99 | | Minus |
